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Report for CCDS986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
986.1 Public Homo sapiens 1 LYSMD1 24 110 108 CCDS HistoryNCBI Gene:388695Re-query CCDS DB by CCDS ID:986.1Re-query CCDS DB by GeneID:388695See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 986.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368908.10 ENSP00000357904.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368908.10Link to Ensembl Protein Viewer:ENSP00000357904.5Re-query CCDS DB by Nucleotide ID:ENST00000368908Re-query CCDS DB by Protein ID:ENSP00000357904
Original member Current member NCBI NM_212551.5 NP_997716.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_212551.5Link to Protein Sequence:NP_997716.1Re-query CCDS DB by Nucleotide ID:NM_212551Re-query CCDS DB by Protein ID:NP_997716Link to BLAST:NP_997716.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997716.1 227 Q96S90-1 227 100% 0 0

Chromosomal Locations for CCDS 986.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151160882 151161020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151161736 151162100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151165079 151165258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGCTTCCCCGTCTAGACAGCCCCCGCCAGGGGGGTCAGGACTGCTTCAAGGGAGCCGGGCTCGTTCAT
ATGGAAGCCTGGTGCAATCGGCCTGCTCCCCAGTGAGGGAAAGACGCCTGGAGCATCAGTTGGAGCCCGG
AGACACCCTGGCTGGACTAGCACTCAAATATGGGGTGACGATGGAACAGATTAAACGTGCAAACCGCCTT
TATACTAATGACTCCATCTTCCTGAAGAAAACCCTCTACATCCCCATCCTGACAGAGCCCAGAGACCTGT
TCAATGGTTTGGACTCTGAGGAAGAGAAAGATGGAGAGGAAAAAGTACACCCAAGTAACAGTGAAGTTTG
GCCACACTCAACTGAGAGGAAGAAACAAGAGACAGGAGCAGGACGTGCCAATGGTGAAGTCCTCCCCACA
CCTGGCCAGGAAACCCCCACGCCCATCCATGACCTCTCTGCCTCTGATTTCCTTAAGAAGCTTGATTCAC
AGATCAGCCTGTCCAAGAAGGCTGCTGCTCAGAAGCTGAAAAAAGGGGAAAATGGGGTACCTGGGGAGGA
TGCAGGTCTCCACCTGAGCTCCCCTTGGATGCAGCAACGAGCAGTCCTAGGTCCTGTGCCGCTGACCCGT
ACCTCTCGGACCCGGACACTACGGGACCAGGAGGATGAAATCTTCAAACTCTGA

Translation (227 aa):
MASPSRQPPPGGSGLLQGSRARSYGSLVQSACSPVRERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRL
YTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEVLPT
PGQETPTPIHDLSASDFLKKLDSQISLSKKAAAQKLKKGENGVPGEDAGLHLSSPWMQQRAVLGPVPLTR
TSRTRTLRDQEDEIFKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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