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Report for CCDS30684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30684.1 Public Homo sapiens 1 TMCO2 24 110 108 CCDS HistoryNCBI Gene:127391Re-query CCDS DB by CCDS ID:30684.1Re-query CCDS DB by GeneID:127391See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30684.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372766.4 ENSP00000361852.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372766.4Link to Ensembl Protein Viewer:ENSP00000361852.3Re-query CCDS DB by Nucleotide ID:ENST00000372766Re-query CCDS DB by Protein ID:ENSP00000361852
Original member Current member NCBI NM_001008740.4 NP_001008740.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008740.4Link to Protein Sequence:NP_001008740.1Re-query CCDS DB by Nucleotide ID:NM_001008740Re-query CCDS DB by Protein ID:NP_001008740Link to BLAST:NP_001008740.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008740.1 182 Q7Z6W1 182 100% 0 0

Chromosomal Locations for CCDS 30684.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 40247994 40248230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40251283 40251594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGTCAACATCTTCATCTTCTAGCTGGGACAACCTCTTAGAGTCTCTCTCTCTCAGCACAGTATGGAATT
GGATACAAGCAAGTTTTTTGGGAGAGACTAGTGCACCTCAGCAAACAAGTTTGGGACTATTAGATAATCT
TGCTCCAGCTGTGCAAATCATCTTGAGGATTTCTTTCTTGATTTTATTGGGAATAGGAATATATGCCTTA
TGGAAACGAAGTATTCAGTCAATTCAGAAAACATTGTTGTTTGTAATCACACTCTACAAACTTTACAAGA
AGGGCTCACATATTTTTGAGGCTTTGCTAGCCAACCCAGAAGGAAGTGGTCTCCGAATTCAAGACAATAA
TAATCTTTTCCTGTCCTTGGGTCTGCAAGAGAAAATTTTGAAAAAACTTAAGACAGTGGAAAACAAAATG
AAGAACCTAGAAGGGATAATCGTTGCTCAAAAACCTGCCACGAAGAGGGATTGCTCCTCTGAGCCCTACT
GCAGCTGCTCTGACTGCCAGAGTCCCTTGTCCACATCAGGGTTTACTTCCCCCATTTGA

Translation (182 aa):
MSTSSSSSWDNLLESLSLSTVWNWIQASFLGETSAPQQTSLGLLDNLAPAVQIILRISFLILLGIGIYAL
WKRSIQSIQKTLLFVITLYKLYKKGSHIFEALLANPEGSGLRIQDNNNLFLSLGLQEKILKKLKTVENKM
KNLEGIIVAQKPATKRDCSSEPYCSCSDCQSPLSTSGFTSPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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