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Report for CCDS51363.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51363.1 Public Mus musculus 4 Pramel5 23 108 98 CCDS HistoryNCBI Gene:384077Re-query CCDS DB by CCDS ID:51363.1Re-query CCDS DB by GeneID:384077See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51363.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035757.12 ENSMUSP00000044222.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035757.12Link to Ensembl Protein Viewer:ENSMUSP00000044222.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000035757Re-query CCDS DB by Protein ID:ENSMUSP00000044222
Original member Current member EBI ENSMUST00000105752.3 ENSMUSP00000101378.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105752.3Link to Ensembl Protein Viewer:ENSMUSP00000101378.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105752Re-query CCDS DB by Protein ID:ENSMUSP00000101378
Original member Current member NCBI NM_001085418.2 NP_001078887.1 Accepted alive Link to Nucleotide Sequence:NM_001085418.2Link to Protein Sequence:NP_001078887.1Re-query CCDS DB by Nucleotide ID:NM_001085418Re-query CCDS DB by Protein ID:NP_001078887Link to BLAST:NP_001078887.1

Chromosomal Locations for CCDS 51363.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 144271169 144271802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 144272647 144273228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 144273718 144274004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGAGCTTCAAGGACCCACCAACACTCCAGCAGCTGGCAAGAAGAAGCCTGCTGAAAGATGAAGCCTTGA
CCATCTCTGCTCTGCTGAACCTGCCTGTGCAACTCTTCCCACCACTCTTCAAGGATGCATTCACCAGCAG
ACAACGTAAGATCCTGAGCCTGATGGTGGCAGCATGGCCCTTCCCAGTCCTTCCTGTGGGAGCTCTGGGT
GGGATTGATCACCTGGAGACCCTGAAAGCTGTACTAGATGGCCTTGATTTGCTGATGTCACAAAAGGATC
GACCTAGCAGGTGGAACCTACAAGTGCTTGATTTGGGAAATGCCCACCAGGACTTCTGGGATGGTTGGGC
TGGACTACTTCATGAAGTCTGCTCTCAAGATGTCTTTGGCAAGAACCAACCAGTGGGAAATCATCCCATC
CCAGGGGGGAAACAGACCATAACTATAAAAATGAATCTTTCCCTCAAGTACTGCCGACATTCTAAATACC
TAAACTATTTGCATTGGTGGGCCGAGCAGAGAAAAGATGGGATACAGGTGATCTGTGAGAAGCTGGAGTT
TACGGGCCCTCACTGTCCCGAACTGAGGTTCTTGAAGTTTTCTTTTGTAGCCTCAATCCAGGAATTGGCA
ATAAAGTCCATACACTGGGATATATATAACCTTGCATTGATAGCCTCTTGCCTGGGCCAGATGAAAAACC
TCCAGAAACTCATTCTCATGAACATCAGGAGACCTCCTGACCTTGCAGACCTACAGGAAGCCCATATTGT
TACAGAGATCTTTTCTGAGTTCTCCAAACTGCATAAGGTTCACTATCTCCATGTGAATAATGTCTACTTC
CTGAAAGAACGCCTGGACCAAATGCTCAGGTGCTTTGAGCGTCCATTAGAGACCCTTGCTATCACTCATT
GCAGGCTTTCAGAATTAGACATGAGGTATCTGTCCCAGTGTCCAAGCATCCATCAGCTCAAATACCTGGA
CATGAGTTACACCACCTTCAAGCCTTCAAGTCATCGATTTCTAGGAAGCCTACTAGAAAGACTGACAGCT
ACTCTGCAGACATTAAAATTGGAGTGCTTTCACCTCACGGACTTCCAAATCCGTGACCTTCTGCCTGGGC
TGAGCCAGTGTTCCCAGCTCACTGAAGTTGATATTGCGATGAATGAATTTTCCGTGGTCAGCCTGAAGAA
GCTGCTGAAGCATACGGCCAACCTCACACAGCTGACCCTGGAGAAGTACCCTGCCCCTGTTGAAGTCTAT
GATGACGGTCATAGTGTTATTTCAGACAGATTTGTACAACTTTGTTCTGAGCTTATGAACACACTCAAGG
GTGTAAGGCAGGCAAAGCAGGTCTATTTTGTGAGTATGCCGTGTTTACGTAATTATGAATTCCTCATTTA
TAATTTGAAGGGCCTGGATTCTTCTGAGCAATTAAGAAGGAGAGGTCTTTCCTGGGCTCTGATAAATGGA
GAGCAGGTCTCAAGAGACTCATTACAGTTATAG

Translation (500 aa):
MSFKDPPTLQQLARRSLLKDEALTISALLNLPVQLFPPLFKDAFTSRQRKILSLMVAAWPFPVLPVGALG
GIDHLETLKAVLDGLDLLMSQKDRPSRWNLQVLDLGNAHQDFWDGWAGLLHEVCSQDVFGKNQPVGNHPI
PGGKQTITIKMNLSLKYCRHSKYLNYLHWWAEQRKDGIQVICEKLEFTGPHCPELRFLKFSFVASIQELA
IKSIHWDIYNLALIASCLGQMKNLQKLILMNIRRPPDLADLQEAHIVTEIFSEFSKLHKVHYLHVNNVYF
LKERLDQMLRCFERPLETLAITHCRLSELDMRYLSQCPSIHQLKYLDMSYTTFKPSSHRFLGSLLERLTA
TLQTLKLECFHLTDFQIRDLLPGLSQCSQLTEVDIAMNEFSVVSLKKLLKHTANLTQLTLEKYPAPVEVY
DDGHSVISDRFVQLCSELMNTLKGVRQAKQVYFVSMPCLRNYEFLIYNLKGLDSSEQLRRRGLSWALING
EQVSRDSLQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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