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Report for CCDS49185.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49185.1 Public Mus musculus 12 Rd3l 23 108 98 CCDS HistoryNCBI Gene:217874Re-query CCDS DB by CCDS ID:49185.1Re-query CCDS DB by GeneID:217874See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49185.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170525.2 ENSMUSP00000130014.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170525.2Link to Ensembl Protein Viewer:ENSMUSP00000130014.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170525Re-query CCDS DB by Protein ID:ENSMUSP00000130014
Original member Current member EBI ENSMUST00000190536.1 ENSMUSP00000140410.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190536.1Link to Ensembl Protein Viewer:ENSMUSP00000140410.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190536Re-query CCDS DB by Protein ID:ENSMUSP00000140410
Original member Current member EBI ENSMUST00000189759.6 ENSMUSP00000140454.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189759.6Link to Ensembl Protein Viewer:ENSMUSP00000140454.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189759Re-query CCDS DB by Protein ID:ENSMUSP00000140454
Original member Current member NCBI NM_001127685.1 NP_001121157.1 Accepted alive Link to Nucleotide Sequence:NM_001127685.1Link to Protein Sequence:NP_001121157.1Re-query CCDS DB by Nucleotide ID:NM_001127685Re-query CCDS DB by Protein ID:NP_001121157Link to BLAST:NP_001121157.1

Chromosomal Locations for CCDS 49185.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111979450 111979744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111980042 111980340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGCCACTTTTTAGCTGGGTGAAATGGCCAAGAAATTATTCCTACAAACAAACACGCTACGCTGGCTCTG
AGGTAGTGACAAAGACTCTGCTTCGGGAGTTAAAATGGCATTTGAAGGAGCGCGAGAGATTAATACATGA
GATCGAAAATGAACAGAAAGTGAAAAAGACAGGCGTGGACTACAACTGGCTGAGAAGTTACCAGACTTCT
CACACAATGATCCCAGCTACCGAACAAAGACAACTGGAAGTTCTGTGCTCACAAGTACAACCTTGTCAAG
CTGGAACCGTTCTCAGCAGATTTAGAGAACTTTTGGCAGAAAACGATGTACTTCCCTGGGAAATTGTCTA
CATCTTCAAGCAAGTTCTGAAAGACTTTCTCAGCAGTCCTGCCAGAGGGGGTCACCATGCTGGCCTATGG
GACTCTGACATCACCGGTCCCCCTACCCCTGCGCTCCCAGGTGAAAGCTCTGAGAGGCCAGACAAAGAGG
AGATACCCACGATTTCAAGCTATGTAGACAAACATGCCAAGAACAGGTTTCCCCCCTGTTCACACAGAGT
ATGGAACCTGCCATACTATTACCCACCAAGCTGA

Translation (197 aa):
MPLFSWVKWPRNYSYKQTRYAGSEVVTKTLLRELKWHLKERERLIHEIENEQKVKKTGVDYNWLRSYQTS
HTMIPATEQRQLEVLCSQVQPCQAGTVLSRFRELLAENDVLPWEIVYIFKQVLKDFLSSPARGGHHAGLW
DSDITGPPTPALPGESSERPDKEEIPTISSYVDKHAKNRFPPCSHRVWNLPYYYPPS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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