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Report for CCDS48369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48369.1 Public Mus musculus 1 Ppfia4 23 108 98 CCDS HistoryNCBI Gene:68507Re-query CCDS DB by CCDS ID:48369.1Re-query CCDS DB by GeneID:68507See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 48369.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168515.7 ENSMUSP00000128314.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168515.7Link to Ensembl Protein Viewer:ENSMUSP00000128314.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168515Re-query CCDS DB by Protein ID:ENSMUSP00000128314
Original member Current member NCBI NM_001144855.1 NP_001138327.1 Accepted alive Link to Nucleotide Sequence:NM_001144855.1Link to Protein Sequence:NP_001138327.1Re-query CCDS DB by Nucleotide ID:NM_001144855Re-query CCDS DB by Protein ID:NP_001138327Link to BLAST:NP_001138327.1

Chromosomal Locations for CCDS 48369.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 134299078 134299136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134299291 134299468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134300470 134300538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134303605 134303780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134304287 134304384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134309576 134309751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134311529 134311555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134312057 134312119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134312536 134312736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134313087 134313168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134313630 134313723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134316615 134316778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134317063 134317196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134317438 134317473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134317808 134318048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134319215 134319423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134321061 134321169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134323002 134323093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134324079 134324210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134324511 134324594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134326484 134326618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134326816 134326962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134327258 134327449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134328000 134328089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134328293 134328367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134328644 134328808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134329146 134329247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134332290 134332523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3564 nt):
ATGTGTGAGGTGATGCCCACAATCAATGAGGGGGACCCCCTGGGGCCCCCCCACGGTGCCGATGCTGAGG
CCAACTTTGAGCAGCTGATGGTGAACATGCTGGATGAGCGAGAGAAGTTGCTGGAGTCCCTTCGGGAGAG
TCAGGAAACTTTGGTAGCCACACAGAGCCGGCTCCAGGATGCCCTTCACGAGCGAGATCAGCTCCAGCGC
CACCTGAACTCCGCCCTTCCCCAGGAATTTGCCACTTTAACTCGGGAGCTAAGCATGTGTCGGGAGCAGC
TTCTGGAGCGGGAGGAAGAGATATCTGAGCTGAAAGCAGAGCGGAATAACACAAGGCTGCTTCTGGAACA
TCTGGAATGCCTCGTGTCCCGCCATGAGCGGTCATTGCGGATGACAGTGGTAAAACGGCAGGCCCAATCA
CCTTCAGGTGTCTCCAGTGAGGTGGAGGTGCTGAAGGCCCTCAAGTCACTATTTGAGCACCACAAGGCCC
TGGATGAGAAGGTGCGAGAGCGGCTCCGGGCAGCTCTAGAGCGCGTTACTACCTTGGAGGAGCAGTTGGC
AGGAGCTCACCAGCAGGTATCTGCCCTGCAGCAGGGTGCAGGAATTCGGGATGGAGTAGCAGAAGAGGAA
GGGACTGTGGATCTGGGACCAAAACGCCTGTGGAAAGATGACACTGGCCGCGTGGAAGAGCTGCAAGGAC
TCTTGGAGAAGCAAAACTATGAGTTGAGCCAGGCCCGTGAGCGGCTGGTCACCCTGAGTGCCACCGTGAC
TGAGCTGGAGGAGGACCTGGGCACGGCCCGCCGAGACCTCATCAAGTCAGAGGAGCTGAGCAGCAAGCAT
CAGCGGGACCTCCGAGAGGCTCTGGCTCAGAAGGAGGACATGGAAGAGAGAATCACCACACTGGAGAAGC
GCTACTTGGCTGCTCAGCGAGAAGCCACATCCATCCATGACCTCAATGACAAACTGGAGAATGAGCTGGC
CAACAAGGAATCCCTGCACCGCCAGTGTGAGGAGAAAGCCCGGCATCTGCAGGAGCTGCTAGAAGTAGCA
GAGCAGAAGTTGCAGCAGACCATGCGCAAGGCAGAGACTCTGCCCGAGGTGGAGGCTGAGCTGTCTCAGA
GAATCGCAGCCCTCACCAAGGCTGAGGAACGTCATGGCAACATTGAGGAACATCTGCGGCAGCTGGAAGG
GCAGCTGGAAGAGAAGAACCAGGAGCTGGCAAGGGTGCGCCAGCGGGAGAAGATGAATGAAGACCACAAC
AAGCGGCTGTCAGACACCGTGGACCGGTTGCTTAGTGAGTCCAACGAACGCCTGCAGCTCCACCTCAAGG
AGCGAATGGCTGCCCTGGAGGAGAAGGGCCGTCTGTCTGAAGAGATTGAGAAGCTGCGCCAAGAGGTGGA
CCAGCTGAAGGGTCGAGGGGGGCCGTTTGTGGATGGCATCCACTCCAGGTCACACGTGGGCAGCGCAGCA
GATGTGAGGTTCTCACTGAGTACAGCCACACACGCGCCCCCAGGTCTGCATCGACGCTATTCGGCGCTGA
GGGATGAATCTGCCAAGGACTGGAAGCCATCGCCACTGCCAGGGGTGTTGGGCGCCACCACGCCTGCCTT
TGACAGTGACCCTGAGATCTCTGATGTGGATGAGGATGAGCCTGGGGGCTTGGTGGGCACTCAGGTCGAT
GTCATCTCACCCGGTGGCCATTCAGATGCCCAGACCCTGGCCATGATGCTACAGGAGCAGCTGGATGCCA
TCAACCAGGAGATCAGGATGATCCAGGAGGAGAAGGAGTCCACTGAGCTTCGAGCTGAGGAGATTGAGAC
CCGTGTGACCAGCGGCAGCATGGAGGCCCTCAACCTGACCCAGCTGCGCAAGCGTGGCTCTATCCCCACC
TCTCTGACCGCCCTTTCCCTGGCCAGTGCATCTCCACCGCTCAGTGGCCGCTCCACACCCAAGCTCACTT
CCCGAAGTGCTGCCCAGGATCTGGACCGAATGGGGGTCATGACCCTGCCCAGCGACTTAAGAAAGCATAG
GAGGAAGCTGCTGTCGCCAGTGTCTCGGGAAGAGAACCGAGAGGATAAAGCCACCATAAAATGTGAGACT
TCTCCTCCTTCCTCACCCAGGACGCTGCGGCTAGAGAAGCTTGGCCACCCTGGCCTGAGTCAAGAGGAGG
GCAAGAGTGCCTTGGAGGGTCAGGACAGCAACCCCAGCAGCAGCAACAGCAGCCAGGACTCCCTGCACAA
GGGCGCCAAGCGCAAGGGCATCAAGTCATCCATTGGCCGCCTGTTTGGGAAGAAGGAGAAGGGCAGGCTG
ATCCAGCTGAGTCGGGATGCCACGGGCCATGTTCTGCTCACAGACTCCGAGCTCAGTCTGCAGGAACCAA
TGGTACCTGCTAAGTTGGGGACCCAGGCAGAGAAGGACCGGCGACTGAAAAAGAAACACCAGCTGCTTGA
AGATGCGCGCCGAAAAGGAATGCCCTTTGCCCAATGGGATGGCCCCACGGTGGTCTCCTGGCTGGAGCTC
TGGGTGGGGATGCCTGCCTGGTATGTGGCGGCCTGCCGGGCCAATGTCAAGAGTGGCGCCATCATGTCCG
CCTTGTCGGACACGGAGATCCAGCGGGAGATCGGCATCAGCAATGCCCTGCACAGGCTCAAGCTCCGCCT
GGCCATCCAGGAGATGGTGTCACTGACGAGCCCCTCAGCTCCACCTACCTCCAGGACTTCTTCAGGGAAT
GTCTGGGTGACCCACGAAGAGATGGAAACTCTGGCAACATCTACCAAAACAGACAGTGAGGAGGGCAGCT
GGGCCCAGACCCTGGCCTATGGAGACATGAATCACGAGTGGATTGGAAACGAATGGCTGCCCAGCCTGGG
GCTCCCTCAGTACCGTAGTTACTTCATGGAGTGCCTGGTGGATGCCCGCATGCTGGATCACCTCACCAAG
AAGGACCTGCGTGTCCATCTCAAGATGGTGGACAGTTTCCATAGAACCAGTCTTCAGTATGGCATCATGT
GTCTGAAGAGGCTGAATTATGACCGGAAGGAACTGGAAAAGAGGCGGGAAGAGAGCCAGCATGAGATCAA
GGATGTGCTGGTCTGGACCAATGACCAGGTGGTTCACTGGGTCCAGTCTATAGGGCTAAGGGACTATGCA
GGAAACCTACACGAGAGTGGTGTGCATGGCGCCCTGCTGGCCCTGGATGAAAACTTCGACCACAACACAC
TGGCCTTGGTTCTGCAGATCCCCACACAGAGCACCCAGGCCCGCCAAGTGATGGAGAGAGAGTTCAATAA
CCTGTTGGCCTTGGGCACAGACAGGAAATTGGATGACGGAGAAGAGAAGGTGTTCCGCCGAGCACCCTCC
TGGAGGAAACGCTTCCGGCCTCGGGATCACCATAGCGGTGGCATGTTGGGCACCTCAGCGGAGACCCTCC
CGGCGGGCTTCCGTGTGTCCACGCTGGGTCCGCTGCAGCCTCCACCTGCCCCGCCTAAGAAGATCATGCC
GGAAGCCGGGACGGCGGGGGCGCAGAGACTGGAGCCCTCTACGGTCCGGACCTACTCCTGCTGA

Translation (1187 aa):
MCEVMPTINEGDPLGPPHGADAEANFEQLMVNMLDEREKLLESLRESQETLVATQSRLQDALHERDQLQR
HLNSALPQEFATLTRELSMCREQLLEREEEISELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQAQS
PSGVSSEVEVLKALKSLFEHHKALDEKVRERLRAALERVTTLEEQLAGAHQQVSALQQGAGIRDGVAEEE
GTVDLGPKRLWKDDTGRVEELQGLLEKQNYELSQARERLVTLSATVTELEEDLGTARRDLIKSEELSSKH
QRDLREALAQKEDMEERITTLEKRYLAAQREATSIHDLNDKLENELANKESLHRQCEEKARHLQELLEVA
EQKLQQTMRKAETLPEVEAELSQRIAALTKAEERHGNIEEHLRQLEGQLEEKNQELARVRQREKMNEDHN
KRLSDTVDRLLSESNERLQLHLKERMAALEEKGRLSEEIEKLRQEVDQLKGRGGPFVDGIHSRSHVGSAA
DVRFSLSTATHAPPGLHRRYSALRDESAKDWKPSPLPGVLGATTPAFDSDPEISDVDEDEPGGLVGTQVD
VISPGGHSDAQTLAMMLQEQLDAINQEIRMIQEEKESTELRAEEIETRVTSGSMEALNLTQLRKRGSIPT
SLTALSLASASPPLSGRSTPKLTSRSAAQDLDRMGVMTLPSDLRKHRRKLLSPVSREENREDKATIKCET
SPPSSPRTLRLEKLGHPGLSQEEGKSALEGQDSNPSSSNSSQDSLHKGAKRKGIKSSIGRLFGKKEKGRL
IQLSRDATGHVLLTDSELSLQEPMVPAKLGTQAEKDRRLKKKHQLLEDARRKGMPFAQWDGPTVVSWLEL
WVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNALHRLKLRLAIQEMVSLTSPSAPPTSRTSSGN
VWVTHEEMETLATSTKTDSEEGSWAQTLAYGDMNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTK
KDLRVHLKMVDSFHRTSLQYGIMCLKRLNYDRKELEKRREESQHEIKDVLVWTNDQVVHWVQSIGLRDYA
GNLHESGVHGALLALDENFDHNTLALVLQIPTQSTQARQVMEREFNNLLALGTDRKLDDGEEKVFRRAPS
WRKRFRPRDHHSGGMLGTSAETLPAGFRVSTLGPLQPPPAPPKKIMPEAGTAGAQRLEPSTVRTYSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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