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Report for CCDS54890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54890.1 Public Homo sapiens 5 CEP120 24 110 108 CCDS HistoryNCBI Gene:153241Re-query CCDS DB by CCDS ID:54890.1Re-query CCDS DB by GeneID:153241See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54890.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306481.11 ENSP00000307419.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000306481.11Link to Ensembl Protein Viewer:ENSP00000307419.6Re-query CCDS DB by Nucleotide ID:ENST00000306481Re-query CCDS DB by Protein ID:ENSP00000307419
Original member Current member EBI ENST00000508442.7 ENSP00000421620.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508442.7Link to Ensembl Protein Viewer:ENSP00000421620.3Re-query CCDS DB by Nucleotide ID:ENST00000508442Re-query CCDS DB by Protein ID:ENSP00000421620
Original member Current member NCBI NM_001166226.2 NP_001159698.1 Accepted alive Link to Nucleotide Sequence:NM_001166226.2Link to Protein Sequence:NP_001159698.1Re-query CCDS DB by Nucleotide ID:NM_001166226Re-query CCDS DB by Protein ID:NP_001159698Link to BLAST:NP_001159698.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159698.1 960 Q8N960-2 960 100% 0 0

Chromosomal Locations for CCDS 54890.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123346519 123346753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123349944 123350089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123364496 123364594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123372650 123372772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123377374 123377535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123378336 123378428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123382111 123382200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123382737 123382889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123382986 123383082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123384951 123385133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123386518 123386667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123388432 123388606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123389924 123390140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123391110 123391337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123393300 123393497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123399136 123399284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123412399 123412540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123416010 123416124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123418359 123418486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2883 nt):
ATGCTTGTAGTGGAAGCAAAGTTTGATGGAGAACAGTTGGCTACTGATCCTGTGGACCACACTGACCAGC
CAGAATTTGCTACTGAGTTAGCTTGGGAAATTGACAGGAAAGCGCTTCATCAGCACAGGCTACAGCGTAC
TCCTATCAAACTCCAATGTTTTGCCTTGGATCCTGTAACTTCAGCCAAGGAAACCATAGGTTACATCGTT
CTGGATTTAAGAACCGCTCAAGAAACAAAGCAGGCACCAAAATGGTACCAGTTGCTGAGTAATAAATACA
CCAAATTCAAGTCTGAGATACAGATAAGTATTGCTTTGGAAACCGATACAAAGCCACCAGTGGATAGCTT
TAAAGCAAAGGGGGCTCCCCCTCGAGATGGAAAAGTACCTGCCATCCTGGCTGGACTTGACCCCAGGGAC
ATTGTGGCTGTGCTGAATGAAGAGGGAGGCTACCATCAGATTGGACCAGCAGAATACTGTACTGACTCCT
TTATTATGTCAGTGACCATAGCATTTGCTACCCAGTTGGAACAGTTAATTCCATGTACCATGAAACTTCC
AGAAAGACAGCCTGAGTTTTTCTTTTACTACTCTTTACTGGGAAATGATGTTACAAATGAACCCTTCAAT
GATTTAATCAACCCAAACTTTGAGCCAGAGAGAGCATCAGTTCGCATCCGTAGCAGTGTAGAAATTCTTC
GTGTTTACCTGGCTCTTCAGTCTAAACTGCAGATTCACCTCTGCTGTGGAGACCAGTCACTTGGAAGTAC
AGAAATACCTTTAACTGGATTACTTAAAAAGGGCAGTACAGAAATCAACCAGCACCCAGTCACAGTCGAA
GGTGCTTTTACCCTTGACCCTCCAAACAGAGCCAAACAGAAGCTTGCACCTATTCCTGTGGAGCTAGCCC
CAACTGTGGGAGTGTCTGTGGCTCTGCAGAGAGAAGGCATAGACTCCCAGTCTTTAATTGAATTAAAGAC
CCAGAATGAACATGAGCCAGAGCATTCAAAGAAGAAAGTTTTAACCCCCATAAAGGAGAAGACACTTACT
GGGCCAAAATCACCAACAGTGTCCCCTGTTCCATCTCACAACCAGTCACCTCCAACAAAAGATGATGCAA
CAGAAAGTGAAGTGGAAAGTTTACAGTATGATAAGGACACCAAACCAAATCCAAAAGCCAGTTCTTCTGT
ACCTGCTTCACTGGCCCAGCTAGTGACTACATCCAATGCTTCAGAAGTAGCTTCAGGACAGAAGATTGCT
GTACCAGCAACATCACATCATTTTTGCTTTTCAATAGACTTAAGGAGTATACATGCCTTGGAGATTGGTT
TTCCAATCAACTGTATATTAAGGTACTCATATCCATTCTTTGGAAGTGCAGCTCCTATTATGACTAATCC
TCCTGTAGAAGTTCGGAAAAACATGGAAGTTTTTCTTCCCCAGTCTTACTGTGCATTTGATTTTGCAACT
ATGCCTCATCAGCTGCAAGACACCTTCTTAAGGATTCCATTACTGGTTGAACTATGGCACAAGGATAAAA
TGAGTAAAGATTTACTTCTGGGAATTGCGAGAATCCAGCTTTCTAACATCTTGTCTTCAGAAAAAACTCG
TTTTTTAGGTTCTAATGGTGAACAGTGTTGGCGTCAAACTTACAGTGAAAGTGTGCCTGTTATAGCAGCA
CAAGGATCAAATAACAGGATAGCAGATCTTTCTTACACAGTGACTCTAGAAGATTATGGACTAGTAAAAA
TGCGTGAGATTTTTATCTCTGATTCATCTCAGGGTGTATCTGCCGTACAGCAAAAGCCGTCTTCTCTTCC
TCCAGCACCTTGTCCTTCAGAGATCCAGACAGAGCCTCGTGAAACGTTAGAATACAAAGCAGCACTTGAG
CTAGAAATGTGGAAGGAGATGCAAGAAGATATATTTGAAAATCAGCTGAAGCAGAAAGAACTGGCTCATA
TGCAGGCTCTTGCAGAGGAATGGAAGAAAAGGGACCGAGAAAGAGAATCACTAGTAAAGAAAAAGGTGGC
TGAATATACTATTCTAGAAGGAAAACTTCAAAAAACTCTAATTGACTTGGAGAAGCGAGAGCAGCAGCTT
GCTAGTGTGGAATCAGAGCTTCAAAGAGAAAAAAAGGAACTGCAATCAGAACGTCAGCGGAACCTGCAAG
AACTGCAGGACTCTATCCGTAGGGCCAAAGAGGACTGTATTCACCAAGTAGAACTAGAAAGGTTAAAAAT
CAAACAGCTCGAAGAGGATAAACACCGCCTTCAGCAACAGCTTAATGATGCTGAAAATAAGTATAAGATT
TTGGAAAAAGAGTTCCAACAGTTCAAGGACCAGCAAAACAACAAACCAGAAATCCGTCTACAGTCTGAAA
TAAATCTTCTCACCTTGGAAAAGGTTGAACTTGAAAGAAAGTTGGAATCTGCAACTAAGTCTAAACTGCA
TTACAAGCAGCAGTGGGGACGAGCTTTGAAAGAACTTGCCAGACTTAAACAGAGGGAGCAAGAAAGTCAA
ATGGCTCGTCTTAAAAAACAGCAGGAAGAATTGGAACAGATGAGACTACGTTACCTTGCCGCTGAGGAAA
AAGATACAGTAAAAACCGAGCGACAAGAATTGTTGGATATAAGAAATGAATTGAACAGGTTAAGGCAACA
AGAGCAAAAACAATACCAGGATTCCACAGAGATTGCAAGTGGAAAAAAGGATGGCCCCCATGGCAGTGTA
TTGGAAGAAGGTTTGGATGATTATTTGACTCGCCTGATAGAAGAAAGGGATACTTTGATGAGAACGGGTG
TGTATAATCACGAGGATCGAATAATAAGTGAACTCGACCGACAGATCAGAGAGATTTTGGCAAAAAGCAA
TGCCAGTAATTAA

Translation (960 aa):
MLVVEAKFDGEQLATDPVDHTDQPEFATELAWEIDRKALHQHRLQRTPIKLQCFALDPVTSAKETIGYIV
LDLRTAQETKQAPKWYQLLSNKYTKFKSEIQISIALETDTKPPVDSFKAKGAPPRDGKVPAILAGLDPRD
IVAVLNEEGGYHQIGPAEYCTDSFIMSVTIAFATQLEQLIPCTMKLPERQPEFFFYYSLLGNDVTNEPFN
DLINPNFEPERASVRIRSSVEILRVYLALQSKLQIHLCCGDQSLGSTEIPLTGLLKKGSTEINQHPVTVE
GAFTLDPPNRAKQKLAPIPVELAPTVGVSVALQREGIDSQSLIELKTQNEHEPEHSKKKVLTPIKEKTLT
GPKSPTVSPVPSHNQSPPTKDDATESEVESLQYDKDTKPNPKASSSVPASLAQLVTTSNASEVASGQKIA
VPATSHHFCFSIDLRSIHALEIGFPINCILRYSYPFFGSAAPIMTNPPVEVRKNMEVFLPQSYCAFDFAT
MPHQLQDTFLRIPLLVELWHKDKMSKDLLLGIARIQLSNILSSEKTRFLGSNGEQCWRQTYSESVPVIAA
QGSNNRIADLSYTVTLEDYGLVKMREIFISDSSQGVSAVQQKPSSLPPAPCPSEIQTEPRETLEYKAALE
LEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVKKKVAEYTILEGKLQKTLIDLEKREQQL
ASVESELQREKKELQSERQRNLQELQDSIRRAKEDCIHQVELERLKIKQLEEDKHRLQQQLNDAENKYKI
LEKEFQQFKDQQNNKPEIRLQSEINLLTLEKVELERKLESATKSKLHYKQQWGRALKELARLKQREQESQ
MARLKKQQEELEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQEQKQYQDSTEIASGKKDGPHGSV
LEEGLDDYLTRLIEERDTLMRTGVYNHEDRIISELDRQIREILAKSNASN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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