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Report for CCDS51256.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51256.2 Public Mus musculus 4 Zyg11a 23 108 98 CCDS HistoryNCBI Gene:230590Re-query CCDS DB by CCDS ID:51256.2Re-query CCDS DB by GeneID:230590See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 51256.1
This coding region was updated to represent an alternate splice site in the coding region, which is supported by RNA-seq data.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 51256.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106690.8 ENSMUSP00000102301.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106690.8Link to Ensembl Protein Viewer:ENSMUSP00000102301.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106690Re-query CCDS DB by Protein ID:ENSMUSP00000102301
Original member Current member NCBI NM_001167936.3 NP_001161408.2 Accepted alive Link to Nucleotide Sequence:NM_001167936.3Link to Protein Sequence:NP_001161408.2Re-query CCDS DB by Nucleotide ID:NM_001167936Re-query CCDS DB by Protein ID:NP_001161408Link to BLAST:NP_001161408.2

Chromosomal Locations for CCDS 51256.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 108182102 108182121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108183648 108183745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108184433 108184494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108187240 108187434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108189447 108189491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108189569 108189730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108191910 108191963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108192052 108192151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108193983 108194047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108196144 108196320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108201193 108201333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108204595 108205346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108210056 108210221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108217833 108217922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2127 nt):
ATGGTCCATTTCTTGCATCCGTTGCTGTGGCCGCGGGCCCTCGTCCTGCCCGACGCCCAGCAGGACGCGC
AGGGCCACTGCTTGGTGCAGGAGGAGGCATCACCCTACTCATTGGTCAACATCTGTCTGGATGTCTTAAT
TGCTGAATTGGACAAATGGTGTTCTAAAAGACCTGATGGAACATTGTGTCTTCCAGAGCATTGGTATTTT
CCTCATGAAATAGCCGATAAATTCCTTGAGAGGATGGCTTGGCAAGGCAAGCTGACTGACAGAACAGCGA
GCATTTTCCAGGGCAAGCAGATGAGCCTGAAGCTCATCAATATTCCGAGAGTTAAACTCTCCGCAGCAGC
CTTCACGAAAGCCTTCTGCCATCACAAGCTCATTGAAGTGAATGCCACGTCGGTGGACTCGGAGCTTCTG
GCCCCAGACATCATCCACGCTCTCCAGAGCAGTGCCTGGATCCAGAAGAACCTCCAGTGTCTTGTGTTAG
ACTCAGTCAGCATCCCTCCGAACTCAGGACTAGTGGCCTTGAGTCATTTCACTGGGCTTCACACTTTAAG
TGTTGCCAATGTGTCCTTTTGCAATGAAGACCTAGTTAGTGTTTCTCAGTTACCGAACCTGGGAAGCTTG
GATATCTCCAATACTCTGGTCACCAACATCTCTGCACTCCTCTCCTGTAAGAACCGACTCAGGTCTCTCA
CAATGCACTATCTAAAGTGCCTGGCCATGAACAGCCCACAGGTCCTTGCAGTTATCAGACAACTGAAATG
CCTGCTTCACCTTGATATTTCTGATCATCAGCAGCTCAGATCAGACCTGGCTTTTTATCTGTTACAGCAG
AAGGACATCCTGCCCAACCTCACATCCCTGGATATTTCAGGGGGCACCGACGTCACTGATCAAGCTGTGG
AATCCTTTCTGCAGCACCGGCCTGCCATGCGATTTGTGGGACTCTTGTATACAGATGCTGGCTATTCTGA
TTTCTTTACGGCAAAGCAAGGCTTGAAGGTTGCTGGAGGAGCCAACATGAGTCAGATTTCAGAAGCACTG
AGTCGTTACCGGAACAGGTCGTGCTTTGTGAAGGAAGCTCTCTTCAGGCTCTTCACGGAAACACTTTCCC
TGCGTGCTGTCCTGCCTGTCATGCTAAAGCTTGTGGCTATAGGAATGAGGAATCATCCATTGGATCTGCC
AGTGCAGTTCACAGCCAGTGCTTGCGCTCTCAACCTAACACGCCAGGAACTGGCCAGGGGAATGCCTGTT
CGTCTGTTGGCAGAGATCACCGATCTACTTTTCAAAGCAACGAAAAATTTCCCCTACTACCAACAGTTAC
AGAAGAATTGCCTCCTCTCCTTAACCAGTTCCAGGATCCTTATGGATGTTCCGTTTGACAGGTTCGATGC
TGCCAAGCTCGCTCTGAGGTGGGTGTGCAGGCGTGAGAGCCCCAAGCTGCGAACAATGGCAGTGAGCATC
ACCTCCATCCTAGCCCTGAAGCTCTCACCTGAGGAGATGGGACAGCTTCAGGAGGAGCTCATTATGGCCA
TCAAGGAACTTCTAACAATCATCAGACAAAAGCTGGCTGAAAATTTAGATGATGTCACCTTCTTGTTTAC
TCTGAAAGCACTTTGGAATCTTACGGATGAGTGTCCATTGGCCTGCAAGTACTTTATGGAAAACGAAGGA
CTAGCAACTGTCATCCGAGTCTTAGAGACATTTTCAATATCTGTGATACAAAGCAAAGTACTTGGTCTTT
TGAACAATGTCGCTGAAGTCCGAGAGCTCTCTTCCAAGCTGGTGACGGAAGATGTGATAGAACGCATCAT
CAGCTTGCTCCACAGCAGCAACCTGGAAGTGAGCTTCCTGGCTGCGGGTGTACTAGCCCACCTGACATGT
GACAGGCAGCACTGGCTATCCCGGGACCTGCAAAGGACTGACCTTCTCCGATACCTGCACTTAGCCATCC
AGAATTGGCCAAGTTCACGGTGTGACATGTCAGTATTGGTGACCTACAGATCTTTCAAAGCATTTTCCCC
ACTCCTTGTCAACTTCTCTCAGCCAGAAGTTCAGCGCTGGGCACTGTGGGCCATACATCATGTTTGCAGT
AAAAACCCGAGACCTAAAGATGTCTGA

Translation (708 aa):
MVHFLHPLLWPRALVLPDAQQDAQGHCLVQEEASPYSLVNICLDVLIAELDKWCSKRPDGTLCLPEHWYF
PHEIADKFLERMAWQGKLTDRTASIFQGKQMSLKLINIPRVKLSAAAFTKAFCHHKLIEVNATSVDSELL
APDIIHALQSSAWIQKNLQCLVLDSVSIPPNSGLVALSHFTGLHTLSVANVSFCNEDLVSVSQLPNLGSL
DISNTLVTNISALLSCKNRLRSLTMHYLKCLAMNSPQVLAVIRQLKCLLHLDISDHQQLRSDLAFYLLQQ
KDILPNLTSLDISGGTDVTDQAVESFLQHRPAMRFVGLLYTDAGYSDFFTAKQGLKVAGGANMSQISEAL
SRYRNRSCFVKEALFRLFTETLSLRAVLPVMLKLVAIGMRNHPLDLPVQFTASACALNLTRQELARGMPV
RLLAEITDLLFKATKNFPYYQQLQKNCLLSLTSSRILMDVPFDRFDAAKLALRWVCRRESPKLRTMAVSI
TSILALKLSPEEMGQLQEELIMAIKELLTIIRQKLAENLDDVTFLFTLKALWNLTDECPLACKYFMENEG
LATVIRVLETFSISVIQSKVLGLLNNVAEVRELSSKLVTEDVIERIISLLHSSNLEVSFLAAGVLAHLTC
DRQHWLSRDLQRTDLLRYLHLAIQNWPSSRCDMSVLVTYRSFKAFSPLLVNFSQPEVQRWALWAIHHVCS
KNPRPKDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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