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Report for CCDS25703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25703.1 Public Mus musculus 11 C1qtnf1 23 108 98 CCDS HistoryNCBI Gene:56745Re-query CCDS DB by CCDS ID:25703.1Re-query CCDS DB by GeneID:56745See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25703.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017590.8 ENSMUSP00000017590.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017590.8Link to Ensembl Protein Viewer:ENSMUSP00000017590.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000017590Re-query CCDS DB by Protein ID:ENSMUSP00000017590
Original member Current member EBI ENSMUST00000106286.2 ENSMUSP00000101893.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106286.2Link to Ensembl Protein Viewer:ENSMUSP00000101893.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106286Re-query CCDS DB by Protein ID:ENSMUSP00000101893
Original member Current member NCBI NM_001204129.1 NP_001191058.1 Accepted alive Link to Nucleotide Sequence:NM_001204129.1Link to Protein Sequence:NP_001191058.1Re-query CCDS DB by Nucleotide ID:NM_001204129Re-query CCDS DB by Protein ID:NP_001191058Link to BLAST:NP_001191058.1
Original member Current member NCBI NM_001204130.1 NP_001191059.1 Accepted alive Link to Nucleotide Sequence:NM_001204130.1Link to Protein Sequence:NP_001191059.1Re-query CCDS DB by Nucleotide ID:NM_001204130Re-query CCDS DB by Protein ID:NP_001191059Link to BLAST:NP_001191059.1
Original member Current member NCBI NM_019959.3 NP_064343.1 Accepted alive Link to Nucleotide Sequence:NM_019959.3Link to Protein Sequence:NP_064343.1Re-query CCDS DB by Nucleotide ID:NM_019959Re-query CCDS DB by Protein ID:NP_064343Link to BLAST:NP_064343.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191058.1 281 Q9QXP7 281 100% 0 0
NP_001191059.1 281 Q9QXP7 281 100% 0 0
NP_064343.1 281 Q9QXP7 281 100% 0 0

Chromosomal Locations for CCDS 25703.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118443696 118443850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118446501 118446640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118447801 118448351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGGGCTCCTGTGCACAGGGATTCATGCTGGGATGCTGCCTGCTGCTGGCCATCACCTGGGGCCCCATCC
TGAGCCTTGTGCCACGAGTTCAGGAGGAACAACAGGAGTGGGAAGAGACAGAGGAGCTGCCATCTCCTCT
GGATCCTGTGACAAGGCCTGAAGAAACACGAGAGAAGTATAGCCCTCGCCAGGGTGAGGACCTCCCCACT
TCTCGGTGCTACCGATGCTGTGACCCCAGCACACCTGTATACCAGACAATTCCTCCACCCCAGATCAACA
TCACCATCCTGAAAGGCGAGAAAGGTGACCGAGGGGATCGAGGCCTCCAGGGGAAGTACGGCAAAATAGG
TTCTACAGGTCCCAGGGGCCATGTTGGCCCCAAAGGGCAGAAGGGATCCATTGGAGCCCCTGGGAACCAC
TGCAAGAGCCAGTACGCAGCCTTCTCCGTGGGCCGGAAGAAGGCTTTGCACAGCAACGACTACTTCCAGC
CCGTGGTCTTCGACACGGAGTTTGTGAACCTCTACAAACACTTCAATATGTTCACTGGGAAGTTCTACTG
CTATGTGCCGGGCATCTACTTCTTCAGCCTCAACGTGCACACTTGGAACCAGAAGGAGACGTACCTGCAC
ATCATGAAGAACGAGGAGGAGGTGGTGATCCTGTATGCGCAGGTGAGCGACCGCAGCATCATGCAGAGTC
AGAGCCTGATGATGGAGCTGCGGGAGGAGGATGAGGTCTGGGTGCGTCTCTTCAAGGGCGAGCGTGAGAA
CGCCATTTTCAGTGACGAGTTCGACACCTACATCACCTTCAGTGGCTACCTGGTCAAGCCAGCCTCTGAG
CCCTAG

Translation (281 aa):
MGSCAQGFMLGCCLLLAITWGPILSLVPRVQEEQQEWEETEELPSPLDPVTRPEETREKYSPRQGEDLPT
SRCYRCCDPSTPVYQTIPPPQINITILKGEKGDRGDRGLQGKYGKIGSTGPRGHVGPKGQKGSIGAPGNH
CKSQYAAFSVGRKKALHSNDYFQPVVFDTEFVNLYKHFNMFTGKFYCYVPGIYFFSLNVHTWNQKETYLH
IMKNEEEVVILYAQVSDRSIMQSQSLMMELREEDEVWVRLFKGERENAIFSDEFDTYITFSGYLVKPASE
P


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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