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Report for CCDS8874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8874.1 Public Homo sapiens 12 SMUG1 24 110 108 CCDS HistoryNCBI Gene:23583Re-query CCDS DB by CCDS ID:8874.1Re-query CCDS DB by GeneID:23583See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8874.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337581.7 ENSP00000338606.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000337581.7Link to Ensembl Protein Viewer:ENSP00000338606.3Re-query CCDS DB by Nucleotide ID:ENST00000337581Re-query CCDS DB by Protein ID:ENSP00000338606
Original member Current member EBI ENST00000401977.6 ENSP00000384828.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000401977.6Link to Ensembl Protein Viewer:ENSP00000384828.2Re-query CCDS DB by Nucleotide ID:ENST00000401977Re-query CCDS DB by Protein ID:ENSP00000384828
Original member Current member EBI ENST00000508394.6 ENSP00000424191.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508394.6Link to Ensembl Protein Viewer:ENSP00000424191.1Re-query CCDS DB by Nucleotide ID:ENST00000508394Re-query CCDS DB by Protein ID:ENSP00000424191
Original member Current member EBI ENST00000682136.1 ENSP00000507590.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682136.1Link to Ensembl Protein Viewer:ENSP00000507590.1Re-query CCDS DB by Nucleotide ID:ENST00000682136Re-query CCDS DB by Protein ID:ENSP00000507590
Original member Current member NCBI NM_001243787.2 NP_001230716.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001243787.2Link to Protein Sequence:NP_001230716.1Re-query CCDS DB by Nucleotide ID:NM_001243787Re-query CCDS DB by Protein ID:NP_001230716Link to BLAST:NP_001230716.1
Original member Current member NCBI NM_001243788.2 NP_001230717.1 Accepted alive Link to Nucleotide Sequence:NM_001243788.2Link to Protein Sequence:NP_001230717.1Re-query CCDS DB by Nucleotide ID:NM_001243788Re-query CCDS DB by Protein ID:NP_001230717Link to BLAST:NP_001230717.1
Original member Current member NCBI NM_001351242.2 NP_001338171.1 Accepted alive Link to Nucleotide Sequence:NM_001351242.2Link to Protein Sequence:NP_001338171.1Re-query CCDS DB by Nucleotide ID:NM_001351242Re-query CCDS DB by Protein ID:NP_001338171Link to BLAST:NP_001338171.1
Original member Current member NCBI NM_001351243.2 NP_001338172.1 Accepted alive Link to Nucleotide Sequence:NM_001351243.2Link to Protein Sequence:NP_001338172.1Re-query CCDS DB by Nucleotide ID:NM_001351243Re-query CCDS DB by Protein ID:NP_001338172Link to BLAST:NP_001338172.1
Original member Current member NCBI NM_001351244.2 NP_001338173.1 Accepted alive Link to Nucleotide Sequence:NM_001351244.2Link to Protein Sequence:NP_001338173.1Re-query CCDS DB by Nucleotide ID:NM_001351244Re-query CCDS DB by Protein ID:NP_001338173Link to BLAST:NP_001338173.1
Original member Current member NCBI NM_001351245.2 NP_001338174.1 Accepted alive Link to Nucleotide Sequence:NM_001351245.2Link to Protein Sequence:NP_001338174.1Re-query CCDS DB by Nucleotide ID:NM_001351245Re-query CCDS DB by Protein ID:NP_001338174Link to BLAST:NP_001338174.1
Original member Current member NCBI NM_001351246.2 NP_001338175.1 Accepted alive Link to Nucleotide Sequence:NM_001351246.2Link to Protein Sequence:NP_001338175.1Re-query CCDS DB by Nucleotide ID:NM_001351246Re-query CCDS DB by Protein ID:NP_001338175Link to BLAST:NP_001338175.1
Original member Current member NCBI NM_001351247.2 NP_001338176.1 Accepted alive Link to Nucleotide Sequence:NM_001351247.2Link to Protein Sequence:NP_001338176.1Re-query CCDS DB by Nucleotide ID:NM_001351247Re-query CCDS DB by Protein ID:NP_001338176Link to BLAST:NP_001338176.1
Original member Current member NCBI NM_001351248.2 NP_001338177.1 Accepted alive Link to Nucleotide Sequence:NM_001351248.2Link to Protein Sequence:NP_001338177.1Re-query CCDS DB by Nucleotide ID:NM_001351248Re-query CCDS DB by Protein ID:NP_001338177Link to BLAST:NP_001338177.1
Original member Current member NCBI NM_001351249.2 NP_001338178.1 Accepted alive Link to Nucleotide Sequence:NM_001351249.2Link to Protein Sequence:NP_001338178.1Re-query CCDS DB by Nucleotide ID:NM_001351249Re-query CCDS DB by Protein ID:NP_001338178Link to BLAST:NP_001338178.1
Original member Current member NCBI NM_001351250.2 NP_001338179.1 Accepted alive Link to Nucleotide Sequence:NM_001351250.2Link to Protein Sequence:NP_001338179.1Re-query CCDS DB by Nucleotide ID:NM_001351250Re-query CCDS DB by Protein ID:NP_001338179Link to BLAST:NP_001338179.1
Original member Current member NCBI NM_001351251.2 NP_001338180.1 Accepted alive Link to Nucleotide Sequence:NM_001351251.2Link to Protein Sequence:NP_001338180.1Re-query CCDS DB by Nucleotide ID:NM_001351251Re-query CCDS DB by Protein ID:NP_001338180Link to BLAST:NP_001338180.1
Original member Current member NCBI NM_001351252.2 NP_001338181.1 Accepted alive Link to Nucleotide Sequence:NM_001351252.2Link to Protein Sequence:NP_001338181.1Re-query CCDS DB by Nucleotide ID:NM_001351252Re-query CCDS DB by Protein ID:NP_001338181Link to BLAST:NP_001338181.1
Original member Current member NCBI NM_001351253.2 NP_001338182.1 Accepted alive Link to Nucleotide Sequence:NM_001351253.2Link to Protein Sequence:NP_001338182.1Re-query CCDS DB by Nucleotide ID:NM_001351253Re-query CCDS DB by Protein ID:NP_001338182Link to BLAST:NP_001338182.1
Original member Current member NCBI NM_001351254.2 NP_001338183.1 Accepted alive Link to Nucleotide Sequence:NM_001351254.2Link to Protein Sequence:NP_001338183.1Re-query CCDS DB by Nucleotide ID:NM_001351254Re-query CCDS DB by Protein ID:NP_001338183Link to BLAST:NP_001338183.1
Original member Current member NCBI NM_001351255.2 NP_001338184.1 Accepted alive Link to Nucleotide Sequence:NM_001351255.2Link to Protein Sequence:NP_001338184.1Re-query CCDS DB by Nucleotide ID:NM_001351255Re-query CCDS DB by Protein ID:NP_001338184Link to BLAST:NP_001338184.1
Original member Current member NCBI NM_001351256.2 NP_001338185.1 Accepted alive Link to Nucleotide Sequence:NM_001351256.2Link to Protein Sequence:NP_001338185.1Re-query CCDS DB by Nucleotide ID:NM_001351256Re-query CCDS DB by Protein ID:NP_001338185Link to BLAST:NP_001338185.1
Original member Current member NCBI NM_001351257.2 NP_001338186.1 Accepted alive Link to Nucleotide Sequence:NM_001351257.2Link to Protein Sequence:NP_001338186.1Re-query CCDS DB by Nucleotide ID:NM_001351257Re-query CCDS DB by Protein ID:NP_001338186Link to BLAST:NP_001338186.1
Original member Current member NCBI NM_001351262.2 NP_001338191.1 Accepted alive Link to Nucleotide Sequence:NM_001351262.2Link to Protein Sequence:NP_001338191.1Re-query CCDS DB by Nucleotide ID:NM_001351262Re-query CCDS DB by Protein ID:NP_001338191Link to BLAST:NP_001338191.1
Original member Current member NCBI NM_014311.3 NP_055126.1 Accepted alive Link to Nucleotide Sequence:NM_014311.3Link to Protein Sequence:NP_055126.1Re-query CCDS DB by Nucleotide ID:NM_014311Re-query CCDS DB by Protein ID:NP_055126Link to BLAST:NP_055126.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230716.1 270 Q53HV7-1 270 100% 0 0
NP_001230717.1 270 Q53HV7-1 270 100% 0 0
NP_001338171.1 270 Q53HV7-1 270 100% 0 0
NP_001338172.1 270 Q53HV7-1 270 100% 0 0
NP_001338173.1 270 Q53HV7-1 270 100% 0 0
NP_001338174.1 270 Q53HV7-1 270 100% 0 0
NP_001338175.1 270 Q53HV7-1 270 100% 0 0
NP_001338176.1 270 Q53HV7-1 270 100% 0 0
NP_001338177.1 270 Q53HV7-1 270 100% 0 0
NP_001338178.1 270 Q53HV7-1 270 100% 0 0
NP_001338179.1 270 Q53HV7-1 270 100% 0 0
NP_001338180.1 270 Q53HV7-1 270 100% 0 0
NP_001338181.1 270 Q53HV7-1 270 100% 0 0
NP_001338182.1 270 Q53HV7-1 270 100% 0 0
NP_001338183.1 270 Q53HV7-1 270 100% 0 0
NP_001338184.1 270 Q53HV7-1 270 100% 0 0
NP_001338185.1 270 Q53HV7-1 270 100% 0 0
NP_001338186.1 270 Q53HV7-1 270 100% 0 0
NP_001338191.1 270 Q53HV7-1 270 100% 0 0
NP_055126.1 270 Q53HV7-1 270 100% 0 0

Chromosomal Locations for CCDS 8874.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 54182096 54182623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54183656 54183940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGCCCCAGGCTTTCCTGCTGGGGTCCATCCATGAGCCTGCAGGTGCCCTCATGGAGCCCCAGCCCTGCC
CTGGAAGCTTGGCTGAGAGCTTCCTGGAGGAGGAGCTTCGGCTCAATGCTGAGCTGAGCCAGCTGCAGTT
TTCGGAGCCTGTGGGCATCATCTACAATCCCGTGGAGTATGCATGGGAGCCACATCGCAACTACGTGACT
CGCTACTGCCAGGGCCCCAAGGAAGTACTCTTCCTGGGCATGAACCCTGGACCTTTTGGCATGGCCCAGA
CTGGGGTGCCCTTTGGGGAAGTAAGCATGGTCCGGGACTGGTTGGGCATTGTGGGGCCTGTGCTGACCCC
TCCCCAAGAGCATCCTAAACGACCAGTGCTGGGACTGGAGTGCCCACAGTCAGAAGTGAGTGGTGCCCGA
TTCTGGGGCTTTTTCCGGAACCTCTGTGGACAGCCTGAGGTCTTCTTCCATCACTGTTTTGTCCACAATC
TATGCCCTCTGCTTTTCCTGGCTCCCAGCGGGCGCAACCTTACTCCTGCTGAGCTGCCTGCCAAGCAGCG
AGAACAGCTTCTTGGGATCTGTGATGCAGCCCTCTGCCGGCAGGTGCAGCTGCTGGGGGTGCGGCTGGTG
GTGGGAGTTGGGCGACTGGCAGAGCAGCGGGCACGACGGGCTCTGGCAGGCCTGATGCCAGAGGTCCAGG
TGGAAGGGCTCCTGCATCCCTCTCCCCGTAACCCACAGGCCAACAAGGGCTGGGAGGCAGTGGCCAAGGA
AAGATTGAATGAGCTGGGGCTGCTGCCACTGCTGTTGAAATGA

Translation (270 aa):
MPQAFLLGSIHEPAGALMEPQPCPGSLAESFLEEELRLNAELSQLQFSEPVGIIYNPVEYAWEPHRNYVT
RYCQGPKEVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIVGPVLTPPQEHPKRPVLGLECPQSEVSGAR
FWGFFRNLCGQPEVFFHHCFVHNLCPLLFLAPSGRNLTPAELPAKQREQLLGICDAALCRQVQLLGVRLV
VGVGRLAEQRARRALAGLMPEVQVEGLLHPSPRNPQANKGWEAVAKERLNELGLLPLLLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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