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Report for CCDS17074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17074.1 Public Mus musculus 2 Slc35c2 23 108 98 CCDS HistoryNCBI Gene:228875Re-query CCDS DB by CCDS ID:17074.1Re-query CCDS DB by GeneID:228875See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17074.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017808.13 ENSMUSP00000017808.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017808.13Link to Ensembl Protein Viewer:ENSMUSP00000017808.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000017808Re-query CCDS DB by Protein ID:ENSMUSP00000017808
Original member Current member EBI ENSMUST00000109298.7 ENSMUSP00000104921.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109298.7Link to Ensembl Protein Viewer:ENSMUSP00000104921.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109298Re-query CCDS DB by Protein ID:ENSMUSP00000104921
Original member Current member EBI ENSMUST00000109299.7 ENSMUSP00000104922.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109299.7Link to Ensembl Protein Viewer:ENSMUSP00000104922.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109299Re-query CCDS DB by Protein ID:ENSMUSP00000104922
Original member Current member EBI ENSMUST00000109300.8 ENSMUSP00000104923.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109300.8Link to Ensembl Protein Viewer:ENSMUSP00000104923.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109300Re-query CCDS DB by Protein ID:ENSMUSP00000104923
Original member Current member NCBI NM_001252573.1 NP_001239502.1 Accepted alive Link to Nucleotide Sequence:NM_001252573.1Link to Protein Sequence:NP_001239502.1Re-query CCDS DB by Nucleotide ID:NM_001252573Re-query CCDS DB by Protein ID:NP_001239502Link to BLAST:NP_001239502.1
Original member Current member NCBI NM_001252574.1 NP_001239503.1 Accepted alive Link to Nucleotide Sequence:NM_001252574.1Link to Protein Sequence:NP_001239503.1Re-query CCDS DB by Nucleotide ID:NM_001252574Re-query CCDS DB by Protein ID:NP_001239503Link to BLAST:NP_001239503.1
Original member Current member NCBI NM_001363015.1 NP_001349944.1 Accepted alive Link to Nucleotide Sequence:NM_001363015.1Link to Protein Sequence:NP_001349944.1Re-query CCDS DB by Nucleotide ID:NM_001363015Re-query CCDS DB by Protein ID:NP_001349944Link to BLAST:NP_001349944.1
Original member Current member NCBI NM_001363016.1 NP_001349945.1 Accepted alive Link to Nucleotide Sequence:NM_001363016.1Link to Protein Sequence:NP_001349945.1Re-query CCDS DB by Nucleotide ID:NM_001363016Re-query CCDS DB by Protein ID:NP_001349945Link to BLAST:NP_001349945.1
Original member Current member NCBI NM_144893.2 NP_659142.1 Accepted alive Link to Nucleotide Sequence:NM_144893.2Link to Protein Sequence:NP_659142.1Re-query CCDS DB by Nucleotide ID:NM_144893Re-query CCDS DB by Protein ID:NP_659142Link to BLAST:NP_659142.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239502.1 364 Q8VCX2 364 100% 0 0
NP_001239503.1 364 Q8VCX2 364 100% 0 0
NP_001349944.1 364 Q8VCX2 364 100% 0 0
NP_001349945.1 364 Q8VCX2 364 100% 0 0
NP_659142.1 364 Q8VCX2 364 100% 0 0

Chromosomal Locations for CCDS 17074.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 165277146 165277273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165277452 165277581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165278241 165278416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165280617 165280700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165280786 165280954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165281308 165281380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165282081 165282144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165282783 165282933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165283249 165283368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGGGGAGGTGGGCCCTGGACGTCGCCTTTGTGTGGAAGGCAGCTCTGACCCTGGGCCTGGTCCTTCTAT
ACTACTGCTTCTCCATAGGCATCACGTTCTACAACAAATGGCTGACAAAGAGCTTCCACTTTCCGCTCTT
CATGACCATGCTGCACCTGGCCGTCATCTTCCTCTTCTCCGCCCTGTCCAGGGCACTGGTTCAATGCTCC
AGCCACAAGGCCCGGGTGGTGCTGAGCTGGACGGACTACCTCAGAAGAGTGGCCCCCACAGCACTGGCAA
CAGCACTTGACGTGGGCCTGTCCAACTGGAGCTTCCTCTACATCACTGTGTCCCTGTACACGATGACCAA
ATCCTCTGCTGTGCTCTTTATCCTGATTTTCTCTCTCATCTTCAAGCTGGAGGAACTGCGTGCAGCCCTG
GTCCTGGTGGTCCTGCTCATTGCTGGGGGCCTCTTCATGTTTACCTATAAGTCCACGCAGTTCAATGTGG
AGGGCTTTGCCTTGGTGCTGGGGGCTTCGTTCATCGGTGGCATCCGCTGGACCCTTACACAAATACTCCT
GCAGAAAGCCGATCTTGGCCTCCAGAATCCCATTGACACCATGTTCCACCTGCAGCCACTCATGTTTCTG
GGCCTCTTCCCTCTCTTTGCCATATTCGAAGGTCTCCACTTGTCCACCTCTGAGAAGATCTTCCGCTTCC
AGGACACAGGGCTGCTCCTGTGGGTGCTTGGGAGCCTCCTCCTCGGTGGGATTCTGGCCTTCGGTTTGGG
CTTCTCCGAGTTCCTCCTGGTCTCCAGAACGTCAAGCCTCACACTCTCCATCGCTGGCATCTTTAAGGAA
GTCTGCACCCTGCTGTTGGCAGCTCACCTGCTGGGCGACCAGATCAGCCTCCTGAACTGGCTGGGCTTTG
CCCTCTGCCTCTCTGGCATCTCCCTGCATGTGGCCCTCAAGGCTCTACATTCCAGAGGTGATGGTGGCCC
CAAGCCCCTGAAGAGCCTGGGCTCCAGCGCTGACCTGGAACTGCTGCTCCGGAGTAGCCAGCAGGAGGAA
GAGGACGGGGAAGAGGAATATTTTGTGACCCAGGGACAACAGTGA

Translation (364 aa):
MGRWALDVAFVWKAALTLGLVLLYYCFSIGITFYNKWLTKSFHFPLFMTMLHLAVIFLFSALSRALVQCS
SHKARVVLSWTDYLRRVAPTALATALDVGLSNWSFLYITVSLYTMTKSSAVLFILIFSLIFKLEELRAAL
VLVVLLIAGGLFMFTYKSTQFNVEGFALVLGASFIGGIRWTLTQILLQKADLGLQNPIDTMFHLQPLMFL
GLFPLFAIFEGLHLSTSEKIFRFQDTGLLLWVLGSLLLGGILAFGLGFSEFLLVSRTSSLTLSIAGIFKE
VCTLLLAAHLLGDQISLLNWLGFALCLSGISLHVALKALHSRGDGGPKPLKSLGSSADLELLLRSSQQEE
EDGEEEYFVTQGQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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