NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16966.1 Public Mus musculus 2 Epb41l1 23 108 98 CCDS HistoryNCBI Gene:13821Re-query CCDS DB by CCDS ID:16966.1Re-query CCDS DB by GeneID:13821See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16966.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029155.15 ENSMUSP00000029155.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029155.15Link to Ensembl Protein Viewer:ENSMUSP00000029155.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029155Re-query CCDS DB by Protein ID:ENSMUSP00000029155
Original member Current member EBI ENSMUST00000103136.7 ENSMUSP00000099425.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103136.7Link to Ensembl Protein Viewer:ENSMUSP00000099425.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103136Re-query CCDS DB by Protein ID:ENSMUSP00000099425
Original member Current member EBI ENSMUST00000103137.9 ENSMUSP00000099426.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103137.9Link to Ensembl Protein Viewer:ENSMUSP00000099426.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103137Re-query CCDS DB by Protein ID:ENSMUSP00000099426
Original member Current member NCBI NM_001006664.3 NP_001006665.1 Accepted alive Link to Nucleotide Sequence:NM_001006664.3Link to Protein Sequence:NP_001006665.1Re-query CCDS DB by Nucleotide ID:NM_001006664Re-query CCDS DB by Protein ID:NP_001006665Link to BLAST:NP_001006665.1
Original member Current member NCBI NM_001291120.1 NP_001278049.1 Accepted alive Link to Nucleotide Sequence:NM_001291120.1Link to Protein Sequence:NP_001278049.1Re-query CCDS DB by Nucleotide ID:NM_001291120Re-query CCDS DB by Protein ID:NP_001278049Link to BLAST:NP_001278049.1
Original member Current member NCBI NM_013510.4 NP_038538.1 Accepted alive Link to Nucleotide Sequence:NM_013510.4Link to Protein Sequence:NP_038538.1Re-query CCDS DB by Nucleotide ID:NM_013510Re-query CCDS DB by Protein ID:NP_038538Link to BLAST:NP_038538.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001006665.1 879 Q9Z2H5-1 879 99.5449% 0 4
NP_001278049.1 879 Q9Z2H5-1 879 99.5449% 0 4
NP_038538.1 879 Q9Z2H5-1 879 99.5449% 0 4

Chromosomal Locations for CCDS 16966.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156493918 156494094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156494957 156495121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156495860 156495964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156496486 156496528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156499587 156499662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156503645 156503863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156505766 156505853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156506351 156506503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156508813 156508910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156509132 156509307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156510733 156510881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156511785 156511820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156514028 156514210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156524881 156525288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156526889 156526993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156529390 156529470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156533781 156533867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156534686 156534769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156536980 156537060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156537367 156537483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156539810 156539818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2640 nt):
ATGACAACAGAGACAGGTCCCGATTCTGAGGTGAAGAAGGCTCAGGAGGAGACTCCACAGCAGCCCGAGG
CTGCCGCAGCTGTGACCACCCCGGTGACCCCCGCGGGCCACAGCCACCCAGAGACCAATTCCAATGAGAA
GCATCTGACCCAGCAGGACACGAGGCCTGCTGAACAGAGCCTGGATATGGACGATAAGGATTACAGTGAG
GCCGATGGCCTGTCGGAGAGGACCACGCCCAGTAAGGCCCAGAAGTCACCTCAGAAGATTGCCAAGAAGT
TCAAGAGTGCCATATGCCGCGTCACCCTGCTCGATGCTTCTGAGTATGAGTGTGAAGTGGAGAAGCACGG
CCGGGGCCAGGTGCTGTTTGACCTGGTCTGTGAGCACCTTAACCTCCTGGAGAAGGACTACTTCGGTCTG
ACCTACTGTGATGCTGACAGCCAGAAGAATTGGCTGGACCCCTCCAAGGAAATCAAGAAGCAGATCCGGA
GTAGCCCCTGGAACTTTGCCTTCACAGTCAAGTTCTACCCTCCTGACCCAGCTCAGCTGACAGAAGACAT
CACAAGGTACTACCTGTGCCTGCAGCTGAGGGCAGACATTATCACAGGCCGCCTGCCTTGCTCCTTTGTC
ACGCATGCCCTTCTGGGCTCCTACGCTGTGCAGGCTGAACTGGGTGACTATGATGCCGAGGAACACGTGG
GCAACTATGTCAGTGAGCTCCGCTTCGCCCCAAACCAGACCCGGGAGCTGGAGGAGAGGATCATGGAGTT
GCATAAGACATACAGGGGCATGACCCCGGGCGAGGCAGAGATCCACTTCCTGGAGAACGCCAAGAAGCTC
TCCATGTATGGAGTTGACCTGCATCACGCTAAGGATTCTGAGGGCATCGATATCATGCTAGGTGTCTGTG
CCAATGGCCTGCTCATCTACCGGGACCGCCTGAGAATCAACCGCTTTGCCTGGCCCAAGATTCTCAAGAT
CTCCTACAAGAGGAGTAACTTCTACATCAAGATCCGGCCTGGGGAGTATGAGCAGTTTGAGAGCACCATC
GGCTTCAAGCTCCCTAACCACCGCTCAGCCAAGCGGTTGTGGAAGGTCTGCATCGAGCACCACACGTTCT
TCCGGCTGGTGTCACCGGAGCCCCCACCCAAGGGCTTTCTGGTGATGGGCTCCAAGTTCCGGTACAGTGG
GAGGACGCAGGCCCAGACCCGCCAAGCCAGTGCCCTTATCGACCGACCCGCCCCCTTCTTTGAACGTTCT
TCCAGCAAACGCTATACCATGTCCCGCAGCCTTGATGGAGCAGAGTTCTCCCGCCCTGCCTCAGTCAGTG
AGAATCACGATGCAGGGCCTGACGGTGACAAGCGGGAAGATGACGCCGAGTCAGGGGGACGCCGATCAGA
GGCTGAAGAAGGAGAGGTCAGGACACCCACCAAGATCAAGGAGCTGAAGCCGGAGCAGGAAACCACGCCA
CGACACAAGCAGGAGTTCCTGGACAAGCCAGAGGATGTCTTGTTGAAGCACCAGGCCAGCATCAATGAAC
TCAAGAGGACCCTGAAGGAGCCCAACAGCAAACTGATCCACCGGGATCGAGACTGGGATCGGGAGCGCAG
GCTGCCCTCGTCGCCTGCCTCCCCCTCCCCCAAGGGCACCCCGGAAAAAGCCAGTGAGAGAGCAGGGCTG
AGGGAGGGCTCAGAGGAGAAAGTCAAACCACCACGCCCACGTGCCCCAGAGAGCGACACGGGAGATGAGG
ACCAGGACCAGGAGAGGGACGCCGTATTCCTGAAGGACAACCACCTGGCCATTGAGCGCAAGTGCTCCAG
CATTACGGTCAGCTCCACGTCCAGCCTGGAGGCTGAGGTGGACTTCACGGTTATTGGTGACTACCATGGC
GGCGCCTTTGAAGACTTCTCCCGAAGCCTCCCTGAGCTTGATCGGGATAAAAGTGACTCTGAGACAGAGG
GCCTGGTGTTCGCCCGGGATCTCAAGGGGCCCTCCAGCCAAGAGGATGAATCTGGGGGCCTCGAGGACAG
CCCGGATCGAGGGGCCTGTTCCACTCCAGAAATGCCCCAGTTTGAGTCTGTGAAAGCAGAAACCATGACC
GTCAGCAGTCTGGCAATCAGGAAGAAGATTGAGCCAGAGGCCATGCTGCAAAGCAGAGTCTCCGCTGCAG
ACAGCACCCAGGTTGATGGGGGTACTCCAATGGTGAAAGACTTCATGACAACTCCCCCCTGCATCACCAC
AGAGACCATCTCAACCACCATGGAGAACAGTCTCAAGTCCGGGAAGGGGGCAGCTGCCATGATCCCAGGC
CCACAGACGGTGGCCACGGAAATCCGTTCTCTTTCACCGATCATCGGGAAAGATGTCCTCACCAGCACGT
ACGGCGCCACCGCGGAAACCCTCTCAACCTCTACCACCACCCATGTCACCAAAACTGTGAAGGGAGGGTT
TTCTGAGACAAGGATCGAAAAGCGAATCATCATTACTGGGGATGAAGATGTCGATCAAGACCAGGCCCTG
GCTTTGGCCATCAAGGAAGCCAAACTACAGCATCCAGACATGCTGGTAACCAAAGCTGTTGTCTATAGAG
AAACAGACCCATCCCCGGAGGAGAGAGACAAGAAGCCACAGGAATCCTGA

Translation (879 aa):
MTTETGPDSEVKKAQEETPQQPEAAAAVTTPVTPAGHSHPETNSNEKHLTQQDTRPAEQSLDMDDKDYSE
ADGLSERTTPSKAQKSPQKIAKKFKSAICRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNLLEKDYFGL
TYCDADSQKNWLDPSKEIKKQIRSSPWNFAFTVKFYPPDPAQLTEDITRYYLCLQLRADIITGRLPCSFV
THALLGSYAVQAELGDYDAEEHVGNYVSELRFAPNQTRELEERIMELHKTYRGMTPGEAEIHFLENAKKL
SMYGVDLHHAKDSEGIDIMLGVCANGLLIYRDRLRINRFAWPKILKISYKRSNFYIKIRPGEYEQFESTI
GFKLPNHRSAKRLWKVCIEHHTFFRLVSPEPPPKGFLVMGSKFRYSGRTQAQTRQASALIDRPAPFFERS
SSKRYTMSRSLDGAEFSRPASVSENHDAGPDGDKREDDAESGGRRSEAEEGEVRTPTKIKELKPEQETTP
RHKQEFLDKPEDVLLKHQASINELKRTLKEPNSKLIHRDRDWDRERRLPSSPASPSPKGTPEKASERAGL
REGSEEKVKPPRPRAPESDTGDEDQDQERDAVFLKDNHLAIERKCSSITVSSTSSLEAEVDFTVIGDYHG
GAFEDFSRSLPELDRDKSDSETEGLVFARDLKGPSSQEDESGGLEDSPDRGACSTPEMPQFESVKAETMT
VSSLAIRKKIEPEAMLQSRVSAADSTQVDGGTPMVKDFMTTPPCITTETISTTMENSLKSGKGAAAMIPG
PQTVATEIRSLSPIIGKDVLTSTYGATAETLSTSTTTHVTKTVKGGFSETRIEKRIIITGDEDVDQDQAL
ALAIKEAKLQHPDMLVTKAVVYRETDPSPEERDKKPQES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH