NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS79377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79377.1 Public Mus musculus 15 Ly6g 23 108 98 CCDS HistoryNCBI Gene:546644Re-query CCDS DB by CCDS ID:79377.1Re-query CCDS DB by GeneID:546644See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 79377.1
This CCDS representation lacks full-length mouse transcript support. Its representation is therefore inferred, but it is supported by paralogous data.

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 79377.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000190262.1 ENSMUSP00000140173.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190262.1Link to Ensembl Protein Viewer:ENSMUSP00000140173.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190262Re-query CCDS DB by Protein ID:ENSMUSP00000140173
Original member Current member NCBI NM_001310438.1 NP_001297367.1 Accepted alive Link to Nucleotide Sequence:NM_001310438.1Link to Protein Sequence:NP_001297367.1Re-query CCDS DB by Nucleotide ID:NM_001310438Re-query CCDS DB by Protein ID:NP_001297367Link to BLAST:NP_001297367.1
Current member NCBI NM_001374230.1 NP_001361159.1 Accepted alive Link to Nucleotide Sequence:NM_001374230.1Link to Protein Sequence:NP_001361159.1Re-query CCDS DB by Nucleotide ID:NM_001374230Re-query CCDS DB by Protein ID:NP_001361159Link to BLAST:NP_001361159.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297367.1 134 P35461 134 100% 0 0
NP_001361159.1 134 P35461 134 100% 0 0

Chromosomal Locations for CCDS 79377.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 75155645 75155714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75156694 75156810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75158522 75158739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGGACACTTGTCACATTGCAAAGTCCTGTGTGCTCATCCTTCTTGTGGTCCTACTGTGTGCAGAAAGAG
CTCAGGGGCTGGAGTGCTACAATTGTATTGGGGTCCCACCTGAGACTTCCTGCAACACAACTACCTGCCC
CTTCTCTGATGGATTTTGCGTTGCTCTGGAGATAGAAGTTATTGTGGACTCTCACAGAAGCAAAGTCAAG
AGCAATCTCTGCCTTCCCATCTGCCCCACTACTCTGGACAATACTGAGATCACTGGTAATGCTGTCAACG
TGAAGACTTACTGTTGCAAGGAAGACCTCTGCAATGCAGCAGTTCCCACTGGAGGCAGCTCCTGGACCAT
GGCAGGGGTGCTTCTGTTCAGCCTGGTTTCAGTCCTTCTGCAGACCTTTCTCTGA

Translation (134 aa):
MDTCHIAKSCVLILLVVLLCAERAQGLECYNCIGVPPETSCNTTTCPFSDGFCVALEIEVIVDSHRSKVK
SNLCLPICPTTLDNTEITGNAVNVKTYCCKEDLCNAAVPTGGSSWTMAGVLLFSLVSVLLQTFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH