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Report for CCDS84011.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84011.1 Public Mus musculus 13 H2bc24 23 108 98 CCDS HistoryNCBI Gene:665622Re-query CCDS DB by CCDS ID:84011.1Re-query CCDS DB by GeneID:665622See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84011.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110467.1 ENSMUSP00000106093.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110467.1Link to Ensembl Protein Viewer:ENSMUSP00000106093.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110467Re-query CCDS DB by Protein ID:ENSMUSP00000106093
Original member Current member EBI ENSMUST00000110476.4 ENSMUSP00000106102.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110476.4Link to Ensembl Protein Viewer:ENSMUSP00000106102.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000110476Re-query CCDS DB by Protein ID:ENSMUSP00000106102
Original member Current member NCBI NM_001313878.1 NP_001300807.1 Accepted alive Link to Nucleotide Sequence:NM_001313878.1Link to Protein Sequence:NP_001300807.1Re-query CCDS DB by Nucleotide ID:NM_001313878Re-query CCDS DB by Protein ID:NP_001300807Link to BLAST:NP_001300807.1

Chromosomal Locations for CCDS 84011.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21833771 21834151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGCCTGAGCCTGCGAAGTCCGCTCCCGCCCCGAAGAAGGGCTCCAAGAAGGCCGTCACCAAGGCCCAGA
AGAAGGACGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTACTCGGTGTACGTGTACAAGGTGCTGAA
GCAAGTGCACCCCGACACCGGCATCTCCTCCAAGGCCATGGGCATCATGAACTCGTTCGTGAACGACATC
TTCGAGCGCATCGCGAGCGAGGCGTCCCGCCTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGG
AGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCGGTGTCGGAGGGCACCAA
GGCCGTCACCAAGTACACCAGCTCCAAGTGA

Translation (126 aa):
MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDI
FERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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