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Report for CCDS27457.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27457.1 Public Mus musculus 15 Ebag9 23 108 98 CCDS HistoryNCBI Gene:55960Re-query CCDS DB by CCDS ID:27457.1Re-query CCDS DB by GeneID:55960See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27457.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022964.8 ENSMUSP00000022964.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022964.8Link to Ensembl Protein Viewer:ENSMUSP00000022964.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022964Re-query CCDS DB by Protein ID:ENSMUSP00000022964
Original member Current member EBI ENSMUST00000226165.1 ENSMUSP00000153791.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226165.1Link to Ensembl Protein Viewer:ENSMUSP00000153791.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226165Re-query CCDS DB by Protein ID:ENSMUSP00000153791
Original member Current member EBI ENSMUST00000227691.1 ENSMUSP00000154361.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227691.1Link to Ensembl Protein Viewer:ENSMUSP00000154361.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227691Re-query CCDS DB by Protein ID:ENSMUSP00000154361
Original member NCBI NM_001357690.1 NP_001344619.1 Updated not alive Link to Nucleotide Sequence:NM_001357690.1Link to Protein Sequence:NP_001344619.1Re-query CCDS DB by Nucleotide ID:NM_001357690Re-query CCDS DB by Protein ID:NP_001344619
Current member NCBI NM_001357690.2 NP_001344619.1 Accepted alive Link to Nucleotide Sequence:NM_001357690.2Link to Protein Sequence:NP_001344619.1Re-query CCDS DB by Nucleotide ID:NM_001357690Re-query CCDS DB by Protein ID:NP_001344619Link to BLAST:NP_001344619.1
Original member NCBI NM_001357691.1 NP_001344620.1 Updated not alive Link to Nucleotide Sequence:NM_001357691.1Link to Protein Sequence:NP_001344620.1Re-query CCDS DB by Nucleotide ID:NM_001357691Re-query CCDS DB by Protein ID:NP_001344620
Current member NCBI NM_001357691.2 NP_001344620.1 Accepted alive Link to Nucleotide Sequence:NM_001357691.2Link to Protein Sequence:NP_001344620.1Re-query CCDS DB by Nucleotide ID:NM_001357691Re-query CCDS DB by Protein ID:NP_001344620Link to BLAST:NP_001344620.1
Original member NCBI NM_019480.5 NP_062353.3 Updated not alive Link to Nucleotide Sequence:NM_019480.5Link to Protein Sequence:NP_062353.3Re-query CCDS DB by Nucleotide ID:NM_019480Re-query CCDS DB by Protein ID:NP_062353
Current member NCBI NM_019480.6 NP_062353.3 Accepted alive Link to Nucleotide Sequence:NM_019480.6Link to Protein Sequence:NP_062353.3Re-query CCDS DB by Nucleotide ID:NM_019480Re-query CCDS DB by Protein ID:NP_062353Link to BLAST:NP_062353.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344619.1 213 Q9D0V7 213 100% 0 0
NP_001344620.1 213 Q9D0V7 213 100% 0 0
NP_062353.3 213 Q9D0V7 213 100% 0 0

Chromosomal Locations for CCDS 27457.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 44624458 44624540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44627557 44627635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44628376 44628534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44630105 44630212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44636764 44636855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44640302 44640422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGGCCATCACTCAGTTTCGGTTATTTAAAGTTTGTACCTGCCTAGCAACAGTGTTCTCGTTCCTAAAGA
GATTAATATGCAGATCTGGCAGAGGAAGGAAATTAAGTGGAGATCAAATAACTTTGCCCACTACAGTTGA
TTATTCGTCTGTCCCTAAGCAGACAGATGTGGAGGAGTGGACTTCCTGGGATGAAGATGCACCCACAAGT
GTAAAGATCGAAGGAGGGAATGGGAATGTGGCTACTCAGCAGAACTCTTTGGAACAACTGGAACCTGACT
ACTTCAAGGACATGACACCAACTATACGGAAAACTCAGAAAATTGTCATTAAGAAGAGAGAACCATTGAA
TTTTGGTGTCCCAGATGGTAGCACGGGTTTTTCCAGTAGATTGGCAGCTACACAAGACATGCCTTTTATT
CATCAATCTTCAGAATTAGGTGACTTAGATACATGGCAAGAAAATAGCAATGCGTGGGAAGAGGAAGAAG
ATGCAGCCTGGCAAGCAGAAGAGGTGCTGAGGCAGCAGAAAATTGCAGACAGAGAGAAGAGAGCAGCAGA
ACAACAGAGGAAGAAAATGGAGAAGGAAGCGCAGCGCCTGATGAAGAAGGAGCAGAACAAAATCGGTGTG
AAGCTTTCCTAA

Translation (213 aa):
MAITQFRLFKVCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQTDVEEWTSWDEDAPTS
VKIEGGNGNVATQQNSLEQLEPDYFKDMTPTIRKTQKIVIKKREPLNFGVPDGSTGFSSRLAATQDMPFI
HQSSELGDLDTWQENSNAWEEEEDAAWQAEEVLRQQKIADREKRAAEQQRKKMEKEAQRLMKKEQNKIGV
KLS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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