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Report for CCDS22931.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22931.2 Public Mus musculus 9 Dpy19l1 23 108 98 CCDS HistoryNCBI Gene:244745Re-query CCDS DB by CCDS ID:22931.2Re-query CCDS DB by GeneID:244745See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 22931.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22931.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000142064.7 ENSMUSP00000119986.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142064.7Link to Ensembl Protein Viewer:ENSMUSP00000119986.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142064Re-query CCDS DB by Protein ID:ENSMUSP00000119986
Original member Current member EBI ENSMUST00000170356.1 ENSMUSP00000129575.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170356.1Link to Ensembl Protein Viewer:ENSMUSP00000129575.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170356Re-query CCDS DB by Protein ID:ENSMUSP00000129575
Original member Current member NCBI NM_001359948.1 NP_001346877.1 Accepted alive Link to Nucleotide Sequence:NM_001359948.1Link to Protein Sequence:NP_001346877.1Re-query CCDS DB by Nucleotide ID:NM_001359948Re-query CCDS DB by Protein ID:NP_001346877Link to BLAST:NP_001346877.1
Original member Current member NCBI NM_172920.4 NP_766508.3 Accepted alive Link to Nucleotide Sequence:NM_172920.4Link to Protein Sequence:NP_766508.3Re-query CCDS DB by Nucleotide ID:NM_172920Re-query CCDS DB by Protein ID:NP_766508Link to BLAST:NP_766508.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346877.1 746 A6X919-1 746 100% 0 0
NP_766508.3 746 A6X919-1 746 100% 0 0

Chromosomal Locations for CCDS 22931.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 24414267 24414423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24421081 24421206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24422260 24422359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24423013 24423187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24424726 24424845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24426134 24426158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24430431 24430480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24432360 24432431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24434339 24434440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24438629 24438709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24439129 24439188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24440755 24440841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24447787 24447864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24450656 24450755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24453806 24453897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24462577 24462634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24473774 24473867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24475333 24475453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24481929 24482066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24485014 24485101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24485705 24485729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24502839 24503130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2241 nt):
ATGGTCCTGCAGGCGCGGAGCAAGCACCGGGACGCGGCTCCCAGGCCGCCCCGGTCGGCCCGCTCGTCGC
CGCCGCCACTGAGCGGGGCATCCGAGGTGGACGCCGGGGAGCTGGGGTCGGAGCGCACGCCGCCGTCGCC
GGGGCGCAGGGGCGCGGCGGGCAGGAAGGGACCCCGCGCAGGGACCGCCGCGCCCGCCCCGGACGGCCTC
GCGGGCCGCCTGGCGGCCGGGCTGCACTGGGCGCTGGGCCTGCGGCGCGGGCGCGGCCGGACCTGGAGCA
CGCTGCTGCTAGCTTCCTTTGCAGCTCTATTGCACTGGAGCCACATAACGCACCTCTTTGAAAACGATCG
GCATTTCTCTCACCTCTCAACGCTGGAAAGGGAGATGGCTTTCCGCACTGAAATGGGGCTGTATTACTCT
TACTTCAAGACTATTGTGGAAGCACCCTCATTTTTGAATGGAGTATGGATGATAATGAATGACAAGCTGA
CTGAATACCCCCTTGTTATTAACACATTAAAAAGGTTCAATCTTTACCCTGAGGTGATCTTAGCCAGCTG
GTACCGGATTTATACCAAAATAATGGATTTGATTGGTATTCAAACCAAGATCTGCTGGACAGTTACCCGA
GGAGAAGGACTCAGTCCGATTGAGAGCTGTGAGGGATTGGGCGATCCTGCTTGCTTTTATGTTGCTGTAA
TTTTTATGTTAAATGGACTAATGATGGCATTATTCTTCATATATGGCACATATTTAAGTGGCAGCCGATT
GGGAGGCGTGGTCACAGTGCTGTGCTTCTTTTTCAATCATGGAGAGTGTACGCGCGTAATGTGGACGCCA
CCTCTCCGAGAAAGCTTCTCATACCCATTCCTTGTGCTGCAGATGTTGCTTGTGACCCATATTCTCAGGG
CTCCAGAGCTTTGCAGAGGGAGTCTGATTGCACTCTGCATCTCCAACGTGCTCTTCATGCTGCCCTGGCA
GTTTGCCCAGTTCGTGCTTCTTACTCAGATTGCATCATTATTTGCCGTGTATGTTGTGGGATACATTGAT
ACACACAAATTACAGAAGATCATTTATATGCACATGATTTCTCTTGTGCTTTGCTTTGTGTTGATGTTTG
GGAACTCGATGTTACTAACATCTTATTATGCATCGTCTTTGGTAATTATTTGGGGCATGCTGGCAATGAA
GCCCCAGTTCCTAAGAATGAATGTATCTGAACTCAGCTTATGGGTTATCCAAGGGTGTGGTTGGTTGTTT
GGAACTGTTATACTCAAGTCTGTGACTTCCAGGATCTTTGGCATTGCAGATGATGCTCATATTGGCAACT
TATTAACATCAAAATTCTTCAGTTACAAGGATTTTGATACTTTACTATATACTTGTGCAGCCGAGTTTGA
CTTCATGGAGAAGGAGACTCCGCTGCGATACACGAAGACACTGCTGCTTCCCGTGGTTCTGGTCACCGTC
GCTGCCATTGTTAGAAAGATTTTTAATGATATGCGGGGTGTCGTAGCTAAACAACGGACACATACAAGAA
AACAACAATTTGAACATGGAGAGTTGGTTTACCACGCTCTGCAGCTGTTAGCGTACACAGCCCTTGGTGT
TCTGATCATGAGACTGAAGCTCTTCCTGACACCACACATGTGTGTTATGGCATCCTTGATCTGTTCCAGA
CAGCTGTTTGGATGGCTCTTTGGCAAAGTGCATCCCGGTGCTGTTGTCTTTGCTATATTAGCAGCAATGT
CTATTCAAGGTTCAGCAAACCTACAAACCCAGTGGAACATTGTAGGGGAGTTCAGCAATTTACCACAAGA
AGAACTCATAGAATGGATCCGATACAGCACAAAACCAGATGCAGTGTTTGCAGGCGCCATGCCCACCATG
GCAAGTGTGAAGCTCTCTGCTCTCCGACCCGTGGTGAACCACCCACATTATGAAGATGCAGGTCTAAGAG
CCAGAACAAAAATAGTATACTCAATGTATAGCCGGAAAGCGCCCGAGGACGTGAAGAAGGAATTGATGAA
ATTAAAAGTGAATTACTACATTTTGGAAGAGTCATGGTGCATAAGAAGATCCAAGCCTGGATGCAGCATG
CCTGAAATCTGGGATGTAGAGGATCCAGACAACGCTGGGAAAACTCCCCTGTGCAACATCTTGGTGAAGG
ATTCCAAGCCTCACTTTACCACAGTGTTCCAGAACAGTGTTTACAAAGTCCTAGAAGTTCTCAGACAGTG
A

Translation (746 aa):
MVLQARSKHRDAAPRPPRSARSSPPPLSGASEVDAGELGSERTPPSPGRRGAAGRKGPRAGTAAPAPDGL
AGRLAAGLHWALGLRRGRGRTWSTLLLASFAALLHWSHITHLFENDRHFSHLSTLEREMAFRTEMGLYYS
YFKTIVEAPSFLNGVWMIMNDKLTEYPLVINTLKRFNLYPEVILASWYRIYTKIMDLIGIQTKICWTVTR
GEGLSPIESCEGLGDPACFYVAVIFMLNGLMMALFFIYGTYLSGSRLGGVVTVLCFFFNHGECTRVMWTP
PLRESFSYPFLVLQMLLVTHILRAPELCRGSLIALCISNVLFMLPWQFAQFVLLTQIASLFAVYVVGYID
THKLQKIIYMHMISLVLCFVLMFGNSMLLTSYYASSLVIIWGMLAMKPQFLRMNVSELSLWVIQGCGWLF
GTVILKSVTSRIFGIADDAHIGNLLTSKFFSYKDFDTLLYTCAAEFDFMEKETPLRYTKTLLLPVVLVTV
AAIVRKIFNDMRGVVAKQRTHTRKQQFEHGELVYHALQLLAYTALGVLIMRLKLFLTPHMCVMASLICSR
QLFGWLFGKVHPGAVVFAILAAMSIQGSANLQTQWNIVGEFSNLPQEELIEWIRYSTKPDAVFAGAMPTM
ASVKLSALRPVVNHPHYEDAGLRARTKIVYSMYSRKAPEDVKKELMKLKVNYYILEESWCIRRSKPGCSM
PEIWDVEDPDNAGKTPLCNILVKDSKPHFTTVFQNSVYKVLEVLRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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