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Report for CCDS24722.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24722.1 Public Mus musculus 11 Cnot8 23 108 98 CCDS HistoryNCBI Gene:69125Re-query CCDS DB by CCDS ID:24722.1Re-query CCDS DB by GeneID:69125See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24722.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020822.11 ENSMUSP00000020822.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020822.11Link to Ensembl Protein Viewer:ENSMUSP00000020822.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020822Re-query CCDS DB by Protein ID:ENSMUSP00000020822
Original member Current member EBI ENSMUST00000108843.7 ENSMUSP00000104471.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108843.7Link to Ensembl Protein Viewer:ENSMUSP00000104471.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108843Re-query CCDS DB by Protein ID:ENSMUSP00000104471
Original member Current member NCBI NM_001356477.2 NP_001343406.1 Accepted alive Link to Nucleotide Sequence:NM_001356477.2Link to Protein Sequence:NP_001343406.1Re-query CCDS DB by Nucleotide ID:NM_001356477Re-query CCDS DB by Protein ID:NP_001343406Link to BLAST:NP_001343406.1
Original member Current member NCBI NM_001363084.1 NP_001350013.1 Accepted alive Link to Nucleotide Sequence:NM_001363084.1Link to Protein Sequence:NP_001350013.1Re-query CCDS DB by Nucleotide ID:NM_001363084Re-query CCDS DB by Protein ID:NP_001350013Link to BLAST:NP_001350013.1
Original member Current member NCBI NM_001363085.1 NP_001350014.1 Accepted alive Link to Nucleotide Sequence:NM_001363085.1Link to Protein Sequence:NP_001350014.1Re-query CCDS DB by Nucleotide ID:NM_001363085Re-query CCDS DB by Protein ID:NP_001350014Link to BLAST:NP_001350014.1
Original member Current member NCBI NM_001363086.1 NP_001350015.1 Accepted alive Link to Nucleotide Sequence:NM_001363086.1Link to Protein Sequence:NP_001350015.1Re-query CCDS DB by Nucleotide ID:NM_001363086Re-query CCDS DB by Protein ID:NP_001350015Link to BLAST:NP_001350015.1
Original member Current member NCBI NM_026949.5 NP_081225.1 Accepted alive Link to Nucleotide Sequence:NM_026949.5Link to Protein Sequence:NP_081225.1Re-query CCDS DB by Nucleotide ID:NM_026949Re-query CCDS DB by Protein ID:NP_081225Link to BLAST:NP_081225.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343406.1 292 Q9D8X5 292 100% 0 0
NP_001350013.1 292 Q9D8X5 292 100% 0 0
NP_001350014.1 292 Q9D8X5 292 100% 0 0
NP_001350015.1 292 Q9D8X5 292 100% 0 0
NP_081225.1 292 Q9D8X5 292 100% 0 0

Chromosomal Locations for CCDS 24722.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58109650 58109766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58111260 58111453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58113052 58113213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58113950 58114094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58115265 58115375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58117439 58117588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGCCTGCGGCACTTGTAGAAAACAGTCAGGTCATCTGTGAGGTGTGGGCCAGCAATCTTGAGGAAGAGA
TGCGGAAGATCCGTGAGATTGTCCTCAGCTACAGCTATATCGCTATGGACACAGAGTTCCCAGGTGTTGT
TGTACGGCCGATCGGTGAATTTCGAAGCTCCATAGATTACCAGTATCAGCTTCTGCGGTGCAATGTTGAT
CTTCTTAAAATCATCCAGCTGGGCCTTACGTTCACCAATGAGAAGGGGGAGTACCCGTCTGGAATCAACA
CATGGCAGTTCAACTTCAAGTTCAACCTGACAGAGGATATGTACTCCCAGGATTCCATAGATCTGCTTGC
AAACTCAGGGCTGCAGTTCCAGAAACACGAGGAGGAAGGGATCGATACACTGCACTTTGCAGAGCTGCTT
ATGACATCGGGAGTGGTTCTCTGTGACAACGTCAAGTGGCTTTCATTTCACAGTGGTTATGATTTTGGCT
ACATGGTAAAGCTGCTAACAGACTCTCGCCTGCCGGAAGAAGAACACGAGTTCTTTCATATCCTGAATCT
TTTCTTCCCGTCCATTTACGATGTGAAATACCTGATGAAGAGCTGCAAAAACCTGAAGGGAGGCCTTCAG
GAGGTGGCTGATCAGTTGGATCTGCAGAGGATCGGAAGGCAGCATCAAGCAGGCTCAGACTCTCTGCTGA
CGGGGATGGCTTTCTTCAGGATGAAAGAGCTATTCTTTGAGGACAGTATTGACGATGCCAAGTATTGTGG
GCGCCTCTATGGCCTGGGCACAGGGGTGGCCCAGAAGCAGAATGAGGATGTGGACTGTGCCCAGGAGAAG
ATGAGCATCTTGGCCATGATCAACAACATGCAGCAGTGA

Translation (292 aa):
MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVD
LLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELL
MTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQ
EVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDCAQEK
MSILAMINNMQQ


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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