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Report for CCDS92800.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92800.1 Public Homo sapiens 2 RGPD1 24 110 108 CCDS HistoryNCBI Gene:400966Re-query CCDS DB by CCDS ID:92800.1Re-query CCDS DB by GeneID:400966See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92800.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641458.2 ENSP00000492954.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641458.2Link to Ensembl Protein Viewer:ENSP00000492954.1Re-query CCDS DB by Nucleotide ID:ENST00000641458Re-query CCDS DB by Protein ID:ENSP00000492954
Original member Current member NCBI NM_001382344.1 NP_001369273.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001382344.1Link to Protein Sequence:NP_001369273.1Re-query CCDS DB by Nucleotide ID:NM_001382344Re-query CCDS DB by Protein ID:NP_001369273Link to BLAST:NP_001369273.1

Chromosomal Locations for CCDS 92800.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86942237 86942308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86951296 86951360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86952942 86953053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86953498 86953650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86957706 86957936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86958282 86958427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86963029 86963224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86969228 86969315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86971747 86971956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86974073 86974254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86974338 86974513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86974681 86974804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86975728 86975886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86976153 86976290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86976553 86976699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86977580 86977759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86977848 86977931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86981083 86981200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86984754 86984848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86985576 86987799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86994841 86994980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86997563 86997758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 87012513 87012547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5271 nt):
ATGAGGCGCAGCAAGGCCTACGGGGAGCGGTACGTCGCCTCGGTGCAGGGCTCCGCCCCGTCGCCTGGAA
AGAAGTTGAGAGGATTCTATTTTGCAAAGCTGTATTATGAAGCTAAAGAATATGATCTTGCTAAAAAATA
CGTATGTACTTACCTTAGTGTGCAAGAGAGGGATCCCAGAGCTCACAGATTTCTGGGTCTTCTTTATGAA
TTGGAAGAAAACACAGAGAAAGCCGTTGAATGTTACAGGCGTTCACTGGAATTAAACCCACCACAAAAAG
ATCTTGTGTTGAAGATTGCAGAATTGCTTTGTAAAAATGATGTTACTGATGGAAGAGCAAAATACTGGGT
TGAAAGGGCAGCGAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAGGAACATCTTCTAGATTGT
GAAGGTGAAGATGGATGGAATAAACTTTTTGACTGGATTCAGTCAGAACTTTATGTAAGACCTGATGACG
TCCATATGAACATCCGGCTAGTGGAGTTGTATCGCTCAAATAAAAGATTGAAGGATGCTGTGGCCCGCTG
CCATGAGGCAGAGAGGAACATAGCTTTGCGTTCAAGTTTAGAGTGGAATTCGTGTGTTGTACAGACCCTT
AAGGAATATCTGGAGTCTTTACAGTGTTTGGAGTCTGATAAAAGTGACTGGCGAGCAACCAATACAGACT
TACTGCTGGCCTATGCTAATCTTATGCTTCTTACGCTTTCCACTAGAGATGTGCAGGAAAGTAGAGAATT
ACTGGAAAGTTTTGATAGTGCTCTTCAGTCTGCAAAATCTTCTTTGGGTGGAAATGATGAACTGTCAGCT
ACTTTCTTAGAAATGAAAGGACATTTCTACATGCATGCTGGTTCTCTGCTCTTGAAGATGGGTCAGCATG
GTAATAATGTTCAATGGCAAGCTCTTTCTGAGCTGGCTGCATTGTGCTATGTCATAGCATTTCAGGTTCC
AAGACCAAAGATTAAATTAATAAAAGGTGAAGCTGGACAAAATCTGCTGGAAATGATGGCCTGTGACCGA
CTGAGCCAATCAGGGCATATGTTGCTAAACTTAAGTCGTGGCAAGCAAGATTTTTTAAAAGAGGTTGTTG
AAACTTTTGCCAACAAAAGCGGGCAGTCTGTGTTATATAATGCTCTGTTTTCTAGTCAGTCATCTAAGGA
TACATCTTTTCTTGGTAGCGATGATATTGGAAACATTGATGTACAAGAACCAGAGCTTGAAGATTTGGCT
AGATACGATGTTGGTGCTATTCAAGCACATAATGGTAGTCTTCAGCACCTTACTTGGCTTGGCTTACAGT
GGAATTCATTGCCTGCTTTACCTGGAATCCGAAAATGGCTAAAACAGCTTTTCCATCATTTGCCCCAGGA
AACCTCAAGGCTTGAAACAAATGCACCTGAATCAATATGTATTTTAGATCTTGAAGTATTTCTCCTTGGA
GTAGTATATACCAGCCACTTACAATTAAAGGAGAAATGTAATTCTCACCACAGCTCCTATCAGCCGTTAT
GCCTGCCCCTTCCTGTGTGTAAACGGCTTTGTACAGAGAGACAAAAATCTTGGTGGGATGCGGTTTGTAC
TCTGATTCACAGAAAAGCAGTACCTGGAAACTCAGCAGAATTGAGACTTGTAGTTCAGCATGAAATAAAC
ACTCTAAGAGCCCAGGAAAAACATGGCCTTCAACCTGCTCTGCTTGTACATTGGGCAAAATGCCTTCAGA
AAATGGGCAGGGGTCTTAATTCTTCTTATGATCAACAAGAATACATAGGGAGAAGTGTTCATTATTGGAA
GAAAGTTTTGCCATTGTTGAAGATAATAAAGAAGAACAGTATTCCTGAACCTATTGATCCTCTGTTTAAA
CATTTTCATAGTGTAGACATTCAGGCATCAGAAATTGTTGAGTATGAAGAAGATGCACACATAACTTTTG
CTATATTGGATGCAGTACATGGAAATATAGAAGATGCTGTGACTGCTTTTGAATCTATAAAAAGTGTTGT
TTCTTATTGGAATCTTGCACTGATTTTTCACAGGAAAGCAGAAGACATTGAAAATGATGCCGTTTTTCCT
GAAGAACAAGAAGAATGCAAAAATTATCTGAGAAAGACCAGGGACTACCTAATAAAGATTATAGATGACA
GTGATTCAAATCTTTCAGTGGTCAAGAAATTGCCTGTGCCCCTGGAGTCTGTAAAAGAGATGCTTAAGTC
AGTCATGCAGGAACTCGAAGACTATAGTGAAGGAGGTCCTCTCTATAAAAATGGTTCTTTGCGAAATGCA
GATTCAGAAATAAAACATTCTACACCATCTCCTACCAAATATTCACTATCACCAAGTAAAAGTTACAAGT
ATTCTCCCAAAACACCACCTCGATGGGCAGAAGATCAGAATTCTTTACGGAAAATGATTTGCCAAGAAGT
AAAGGCCATTACGAAACTAAATAGCAGTAAGTCAGCATCCCGTCATCGTTGGCCCACAGAGAATTATGGA
CCAGACTCGGTGCCTGATGGATATCAGGGGTCACAGACATTTCATGGGGCTCCACTAACAGTTGCAACTA
CTGGCCCTTCAGTATATTATAGTCAGTCACCAGCATATAATTCCCAGTATCTTCTCAGACCAGCAGCTAA
TGTTACTCCCACAAAGGGTTCTTCTAATACAGAATTTAAGTCAACCAAAGAAGGATTTTCCATCGCTGTG
TCTGCTGATGGATTTAAATTTGGCATTTCGGAACCAGGAAATCAAGAAAAGAAAAGTGAAAAGCCTCTTG
AAAATGATACTGGCTTCCAGGCTCAGGATATTAGTGGCCAGAAGAATGGCCGTGGTGTGATTTTTGGCCA
AACAAGTAGCACTTTTACATTTGCAGATGTTGCAAAATCAACTTCAGGAGAAGGATTTCAGTTTGGCAAA
AAAGACCCCAATTTCAAGGGATTTTCAGGTGCTGGAGAAAAATTATTCTCATCACAATGCGGTAAAATGG
CCAATAAAGCAAACACTTCCGGTGACTTTGAGAAAGATGATGATGCCTGTAAGACTGAGGACAGCGATGA
CATCCATTTTGAACCAGTAGTTCAAATGCCTGAAAAAGTAGAACTTGTAACAGGAGAAGAAGGTGAAAAA
GTTCTGTATTCACAGGGGGTAAAACTATTTAGATTTGATGCTGAGATAAGTCAGTGGAAAGAAAGGGGCT
TGGGGAACTTAAAAATTCTCAAAAATGAGGTCAATGGCAAACCAAGAATGCTGATGCGAAGAGACCAAGT
ACTAAAAGTGTGTGCTAATCATTGGATAACAACTACAATGAACCTGAAGCCCCTCTCTGGATCAGATAGA
GCATGGATGTGGTTAGCCAGTGATTTCTCTGATGGTGATGCCAAACTAGAGCGGTTGGCAGCACAATTTA
AAACACCAGAGCTGGCTGAAGAATTCAAGCAGAAATTTGAGGAATGCCAGCGGCTTCTGTTAGACATACC
ACTTCAAACTCCCCATAAACTTGTAGATACTGGCAGAGCTGCCAAGCTAATACAGAGAGCTGAAGAAATG
AAGAGTGGACTGAAAGATTTCAAAACGTTTTTGACAAATGATCAAACAAAAGTCACTGAGGAAGAAAATA
AGGGTTCAGGTACAGGTGCAGCCGGTGCCTCAGACACAACAATAAAACCCAATCCTGAAAACACTGGGCC
CACATTAGAATGGGATAACTATGATTTAAGGGAAGATGCTTTGGATGATAATGTTAGTAGTAGCTCAGTA
CATGATTCTCCGTTGGCAAGTAGCCCTGTGAGAAAAAATATTTTCCGCTTTGATGAGTCAACAACAGGAT
TTAACTTCAGTTTTAAATCTGCTTTGAGTCTATCTAAGTCTCCTGCCAAGTTGAATCAGAGTGGGACTTC
AGTTGGCACTGATGAAGAATCTGATGTTACTCAAGAAGAAGAGAGAGATGGACAGTACTTTGAACCTGTT
GTTCCTTTACCTGATCTAGTTGAAGTATCCAGTGGTGAGGAAAATGAACAAGTTGTTTTTAGTCACAGGG
CAGAACTCTACAGATATGATAAAGATGTTGGTCAATGGAAAGAAAGGGGCATTGGTGATATAAAGATTTT
ACAGAATTATGATAATAAGCAAGTTCGTATAGTGATGAGAAGGGACCAAGTATTAAAACTTTGTGCCAAT
CACAGAATAACTCCAGACATGAGTTTGCAAAATATGAAAGGGACAGAAAGAGTATGGGTGTGGACTGCAT
GTGATTTTGCAGATGGAGAAAGAAAAGTAGAGCATTTAGCTGTTCGTTTTAAACTACAGGATGTTGCAGA
CTCATTTAAGAAAATTTTTGATGAAGCAAAAACAGCCCAGGAAAAAGATTCTTTGATAACACCTCATGTT
TCTCGGTCAAGCACTCCCAGAGAGTCACCATGTGGCAAAATTGCTGTAGCTGTATTAGAAGAAACCACAA
GAGAGAGGACAGATGTTATTCAGGGTGATGATGTAGCAGATGCAGCTTCAGAAGTTGAAGTGTCTAGCAC
ATCTGAAACAACAACAAAAGCAGTGGTTTCTCCTCCAAAGTTTGTATTTGGTTCAGAGTCTGTTAAAAGA
ATTTTTAGTAGTGAAAAATCAAACCCATTTGCATTTGGCAACAGTTCTGCCACTGGGTCTTTGTTTGGAT
TTAGTTTTAATGCACCTTTGAAAAGTAACGATAGTGAAACTAGTTCAGTAGCCCAGAGTGGATCTGAAAG
CAAAGTGGAACCTAAAAAATGTGAACTGTCAAAGAACTCTGATATCGAACAGTCTTCAGATAGCAAAGTC
AAAAATCTCTCTGCTTCCTTTCCAATGGAAGAATCTTCAATCAACTACACATTTAAAACACCAGAAAAGG
AGCCTCCATTATGGCATGCTGAATTTACCAAAGAAGAATTGGTTCAGAAGCTCAGTTCCACCACAAAAAG
TGCAGATCAGTTAAACGGCCTGCTTCGGGAAACAGAGGCAACCAGTGCAGTCCTTATGGAGCAAATTAAG
CTTCTCAAAAGTGAAATAAGAAGATTGGAAAGGAATCAAGAGGAGTCTGCAGCTAACGTGGAACACTTGA
AGAACGTCTTGCTGCAGTTCATTTTCTTGAAGCCAGGTAGTGAGAGAGAGAGCCTTCTTCCTGTTATAAA
TACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAGGTCTTCAAGAAACC
TCCATACCCAAGAAAAAATAG

Translation (1756 aa):
MRRSKAYGERYVASVQGSAPSPGKKLRGFYFAKLYYEAKEYDLAKKYVCTYLSVQERDPRAHRFLGLLYE
LEENTEKAVECYRRSLELNPPQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAIYKLKEHLLDC
EGEDGWNKLFDWIQSELYVRPDDVHMNIRLVELYRSNKRLKDAVARCHEAERNIALRSSLEWNSCVVQTL
KEYLESLQCLESDKSDWRATNTDLLLAYANLMLLTLSTRDVQESRELLESFDSALQSAKSSLGGNDELSA
TFLEMKGHFYMHAGSLLLKMGQHGNNVQWQALSELAALCYVIAFQVPRPKIKLIKGEAGQNLLEMMACDR
LSQSGHMLLNLSRGKQDFLKEVVETFANKSGQSVLYNALFSSQSSKDTSFLGSDDIGNIDVQEPELEDLA
RYDVGAIQAHNGSLQHLTWLGLQWNSLPALPGIRKWLKQLFHHLPQETSRLETNAPESICILDLEVFLLG
VVYTSHLQLKEKCNSHHSSYQPLCLPLPVCKRLCTERQKSWWDAVCTLIHRKAVPGNSAELRLVVQHEIN
TLRAQEKHGLQPALLVHWAKCLQKMGRGLNSSYDQQEYIGRSVHYWKKVLPLLKIIKKNSIPEPIDPLFK
HFHSVDIQASEIVEYEEDAHITFAILDAVHGNIEDAVTAFESIKSVVSYWNLALIFHRKAEDIENDAVFP
EEQEECKNYLRKTRDYLIKIIDDSDSNLSVVKKLPVPLESVKEMLKSVMQELEDYSEGGPLYKNGSLRNA
DSEIKHSTPSPTKYSLSPSKSYKYSPKTPPRWAEDQNSLRKMICQEVKAITKLNSSKSASRHRWPTENYG
PDSVPDGYQGSQTFHGAPLTVATTGPSVYYSQSPAYNSQYLLRPAANVTPTKGSSNTEFKSTKEGFSIAV
SADGFKFGISEPGNQEKKSEKPLENDTGFQAQDISGQKNGRGVIFGQTSSTFTFADVAKSTSGEGFQFGK
KDPNFKGFSGAGEKLFSSQCGKMANKANTSGDFEKDDDACKTEDSDDIHFEPVVQMPEKVELVTGEEGEK
VLYSQGVKLFRFDAEISQWKERGLGNLKILKNEVNGKPRMLMRRDQVLKVCANHWITTTMNLKPLSGSDR
AWMWLASDFSDGDAKLERLAAQFKTPELAEEFKQKFEECQRLLLDIPLQTPHKLVDTGRAAKLIQRAEEM
KSGLKDFKTFLTNDQTKVTEEENKGSGTGAAGASDTTIKPNPENTGPTLEWDNYDLREDALDDNVSSSSV
HDSPLASSPVRKNIFRFDESTTGFNFSFKSALSLSKSPAKLNQSGTSVGTDEESDVTQEEERDGQYFEPV
VPLPDLVEVSSGEENEQVVFSHRAELYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCAN
HRITPDMSLQNMKGTERVWVWTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKDSLITPHV
SRSSTPRESPCGKIAVAVLEETTRERTDVIQGDDVADAASEVEVSSTSETTTKAVVSPPKFVFGSESVKR
IFSSEKSNPFAFGNSSATGSLFGFSFNAPLKSNDSETSSVAQSGSESKVEPKKCELSKNSDIEQSSDSKV
KNLSASFPMEESSINYTFKTPEKEPPLWHAEFTKEELVQKLSSTTKSADQLNGLLRETEATSAVLMEQIK
LLKSEIRRLERNQEESAANVEHLKNVLLQFIFLKPGSERESLLPVINTMLQLSPEEKGKLAAVAQGLQET
SIPKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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