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Report for CCDS39206.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39206.1 Public Mus musculus 5 Cplx1 23 108 98 CCDS HistoryNCBI Gene:12889Re-query CCDS DB by CCDS ID:39206.1Re-query CCDS DB by GeneID:12889See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39206.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046892.9 ENSMUSP00000038502.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046892.9Link to Ensembl Protein Viewer:ENSMUSP00000038502.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000046892Re-query CCDS DB by Protein ID:ENSMUSP00000038502
Original member Current member NCBI NM_007756.3 NP_031782.3 Accepted alive Link to Nucleotide Sequence:NM_007756.3Link to Protein Sequence:NP_031782.3Re-query CCDS DB by Nucleotide ID:NM_007756Re-query CCDS DB by Protein ID:NP_031782Link to BLAST:NP_031782.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031782.3 134 P63040 134 100% 0 0

Chromosomal Locations for CCDS 39206.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108520129 108520326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108525392 108525567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108548506 108548536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGGAGTTCGTGATGAAACAAGCCCTGGGAGGGGCCACCAAGGACATGGGGAAGATGCTTGGGGGTGATG
AGGAAAAGGACCCCGATGCTGCTAAGAAGGAGGAAGAGCGGCAGGAGGCACTGCGGCAGGCAGAGGAGGA
GCGCAAAGCAAAGTACGCCAAGATGGAGGCAGAACGTGAGGTCATGCGGCAGGGTATAAGAGACAAGTAT
GGCATCAAGAAGAAGGAGGAGCGTGAGGCTGAGGCTCAGGCAGCCATGGAGGCCAACTCGGAAGGCAGCC
TGACTCGACCCAAGAAGGCTATCCCACCGGGCTGTGGCGATGAGCCAGAGGAGGAAGATGAGAGCATCCT
GGACACTGTCATCAAGTACCTGCCTGGGCCACTGCAGGACATGTTCAAGAAGTAA

Translation (134 aa):
MEFVMKQALGGATKDMGKMLGGDEEKDPDAAKKEEERQEALRQAEEERKAKYAKMEAEREVMRQGIRDKY
GIKKKEEREAEAQAAMEANSEGSLTRPKKAIPPGCGDEPEEEDESILDTVIKYLPGPLQDMFKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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