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Report for CCDS29937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29937.1 Public Mus musculus 19 Emx2 23 108 98 CCDS HistoryNCBI Gene:13797Re-query CCDS DB by CCDS ID:29937.1Re-query CCDS DB by GeneID:13797See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29937.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062216.3 ENSMUSP00000053361.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062216.3Link to Ensembl Protein Viewer:ENSMUSP00000053361.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000062216Re-query CCDS DB by Protein ID:ENSMUSP00000053361
Original member Current member NCBI NM_010132.2 NP_034262.2 Accepted alive Link to Nucleotide Sequence:NM_010132.2Link to Protein Sequence:NP_034262.2Re-query CCDS DB by Nucleotide ID:NM_010132Re-query CCDS DB by Protein ID:NP_034262Link to BLAST:NP_034262.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034262.2 253 Q04744 253 100% 0 0

Chromosomal Locations for CCDS 29937.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 59459216 59459624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59461662 59461846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59463880 59464047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGTTTCAGCCGGCGCCCAAGCGCTGCTTCACCATCGAGTCGCTGGTGGCCAAGGACAGTCCCCTGCCTG
CCTCGCGCTCCGAGGATCCCATCCGTCCCGCGGCACTCAGCTACGCCAATTCCAGTCCCATAAATCCGTT
CCTCAACGGCTTCCACTCGGCCGCCGCCGCCGCCGCCGCCGGCAGGGGCGTCTACTCCAACCCGGACTTG
GTGTTCGCCGAGGCGGTCTCGCACCCGCCCAACCCCGCCGTGCCGGTGCACCCGGTGCCGCCGCCGCACG
CCCTGGCCGCCCACCCCCTGCCCTCCTCGCATTCGCCACACCCCCTCTTCGCCTCGCAGCAGCGGGACCC
GTCCACCTTCTACCCCTGGCTCATCCACCGCTACCGATATCTGGGTCATCGCTTCCAAGGGAACGACACA
AGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGC
CGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCA
GCTGGCTCACAGTCTCAGTCTTACGGAAACTCAGGTAAAAGTATGGTTTCAGAACCGGAGAACGAAATTC
AAAAGGCAAAAGCTAGAGGAAGAAGGCTCAGATTCTCAACAGAAGAAAAAAGGGACACACCACATTAACC
GGTGGAGAATTGCTACCAAGCAGGCGAGTCCGGAGGAAATAGATGTGACCTCAGACGATTAA

Translation (253 aa):
MFQPAPKRCFTIESLVAKDSPLPASRSEDPIRPAALSYANSSPINPFLNGFHSAAAAAAAGRGVYSNPDL
VFAEAVSHPPNPAVPVHPVPPPHALAAHPLPSSHSPHPLFASQQRDPSTFYPWLIHRYRYLGHRFQGNDT
SPESFLLHNALARKPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQVKVWFQNRRTKF
KRQKLEEEGSDSQQKKKGTHHINRWRIATKQASPEEIDVTSDD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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