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Report for CCDS12678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12678.1 Public Homo sapiens 19 IRF2BP1 24 110 108 CCDS HistoryNCBI Gene:26145Re-query CCDS DB by CCDS ID:12678.1Re-query CCDS DB by GeneID:26145See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12678.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302165.5 ENSP00000307265.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302165.5Link to Ensembl Protein Viewer:ENSP00000307265.3Re-query CCDS DB by Nucleotide ID:ENST00000302165Re-query CCDS DB by Protein ID:ENSP00000307265
Original member Current member NCBI NM_015649.3 NP_056464.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015649.3Link to Protein Sequence:NP_056464.1Re-query CCDS DB by Nucleotide ID:NM_015649Re-query CCDS DB by Protein ID:NP_056464Link to BLAST:NP_056464.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056464.1 584 Q8IU81 584 100% 0 0

Chromosomal Locations for CCDS 12678.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45884020 45885774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1755 nt):
ATGGCGTCTGTGCAGGCGTCCCGCCGCCAGTGGTGCTACCTGTGCGACCTGCCCAAGATGCCGTGGGCCA
TGGTGTGGGACTTCAGCGAGGCCGTGTGTCGCGGCTGCGTGAACTTCGAGGGCGCGGACCGCATCGAACT
GCTCATCGATGCCGCCCGCCAGCTCAAGCGCAGCCACGTGCTCCCCGAGGGCCGCTCGCCCGGGCCCCCG
GCCCTTAAGCACCCGGCCACCAAGGACCTGGCGGCGGCAGCCGCACAGGGGCCCCAGCTGCCGCCCCCGC
AGGCCCAGCCCCAGCCGTCAGGGACCGGCGGCGGCGTGTCGGGCCAGGACCGCTATGACAGGGCCACATC
ATCAGGCCGCCTCCCCCTGCCCTCGCCCGCCCTGGAGTACACTCTGGGGTCCCGCCTGGCCAATGGGCTG
GGCCGTGAGGAGGCCGTGGCTGAGGGGGCGCGAAGGGCCTTGCTTGGCTCCATGCCTGGCTTGATGCCCC
CTGGGCTGCTGGCAGCTGCAGTGTCTGGCCTGGGAAGCCGAGGCCTGACGCTGGCACCCGGCTTGAGTCC
TGCCCGTCCCCTCTTCGGCTCCGATTTCGAGAAAGAGAAGCAGCAGAGGAATGCGGACTGTCTGGCAGAA
CTGAACGAGGCCATGCGAGGCCGGGCAGAGGAATGGCACGGGCGCCCCAAAGCAGTGCGGGAACAGCTAC
TGGCGCTGTCCGCCTGCGCCCCGTTCAATGTGCGCTTCAAGAAGGATCACGGGCTGGTGGGGCGAGTGTT
CGCCTTCGATGCTACTGCCCGTCCTCCAGGATACGAGTTCGAGCTGAAGCTCTTCACCGAATACCCCTGT
GGTTCCGGCAATGTGTACGCCGGCGTCCTGGCAGTGGCTCGCCAGATGTTCCACGATGCTCTGCGGGAGC
CGGGCAAGGCACTGGCTTCTTCGGGCTTCAAGTACCTCGAATATGAACGCCGGCATGGATCAGGAGAATG
GCGGCAGCTGGGCGAGCTGCTTACCGACGGCGTCCGCAGCTTCCGCGAGCCAGCTCCCGCGGAGGCCCTG
CCCCAGCAGTACCCAGAGCCGGCCCCTGCGGCTCTCTGTGGCCCACCCCCGCGAGCCCCATCCCGGAACC
TGGCGCCCACGCCGCGCCGTCGCAAGGCATCCCCCGAGCCGGAGGGCGAGGCGGCTGGGAAGATGACCAC
CGAGGAGCAGCAGCAACGGCACTGGGTGGCACCCGGCGGCCCGTACTCCGCTGAGACCCCTGGTGTGCCC
TCGCCCATTGCCGCCCTGAAGAATGTGGCCGAAGCCCTGGGCCACTCACCCAAGGACCCTGGCGGAGGCG
GGGGGCCTGTGCGTGCAGGGGGCGCCAGCCCTGCAGCCTCCTCCACGGCCCAGCCGCCAACCCAGCATCG
CCTTGTGGCCCGCAACGGCGAAGCAGAAGTCAGTCCCACAGCGGGGGCCGAAGCTGTCAGCGGGGGTGGC
AGCGGCACTGGGGCGACCCCTGGGGCCCCCCTGTGCTGTACCCTGTGCAGGGAGCGGCTAGAAGACACCC
ACTTCGTCCAGTGCCCCTCGGTGCCCGGACACAAGTTCTGCTTTCCCTGCTCCCGGGAGTTCATCAAGGC
GCAGGGCCCGGCCGGGGAGGTGTACTGCCCGAGCGGAGACAAGTGCCCGCTGGTCGGCTCCTCCGTGCCC
TGGGCCTTCATGCAGGGCGAGATCGCCACCATCCTTGCTGGAGACATCAAAGTTAAGAAAGAACGGGACC
CCTAG

Translation (584 aa):
MASVQASRRQWCYLCDLPKMPWAMVWDFSEAVCRGCVNFEGADRIELLIDAARQLKRSHVLPEGRSPGPP
ALKHPATKDLAAAAAQGPQLPPPQAQPQPSGTGGGVSGQDRYDRATSSGRLPLPSPALEYTLGSRLANGL
GREEAVAEGARRALLGSMPGLMPPGLLAAAVSGLGSRGLTLAPGLSPARPLFGSDFEKEKQQRNADCLAE
LNEAMRGRAEEWHGRPKAVREQLLALSACAPFNVRFKKDHGLVGRVFAFDATARPPGYEFELKLFTEYPC
GSGNVYAGVLAVARQMFHDALREPGKALASSGFKYLEYERRHGSGEWRQLGELLTDGVRSFREPAPAEAL
PQQYPEPAPAALCGPPPRAPSRNLAPTPRRRKASPEPEGEAAGKMTTEEQQQRHWVAPGGPYSAETPGVP
SPIAALKNVAEALGHSPKDPGGGGGPVRAGGASPAASSTAQPPTQHRLVARNGEAEVSPTAGAEAVSGGG
SGTGATPGAPLCCTLCRERLEDTHFVQCPSVPGHKFCFPCSREFIKAQGPAGEVYCPSGDKCPLVGSSVP
WAFMQGEIATILAGDIKVKKERDP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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