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Report for CCDS20027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20027.1 Public Mus musculus 6 Agk 23 108 98 CCDS HistoryNCBI Gene:69923Re-query CCDS DB by CCDS ID:20027.1Re-query CCDS DB by GeneID:69923See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20027.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031977.11 ENSMUSP00000031977.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031977.11Link to Ensembl Protein Viewer:ENSMUSP00000031977.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031977Re-query CCDS DB by Protein ID:ENSMUSP00000031977
Original member Current member NCBI NM_023538.2 NP_076027.1 Accepted alive Link to Nucleotide Sequence:NM_023538.2Link to Protein Sequence:NP_076027.1Re-query CCDS DB by Nucleotide ID:NM_023538Re-query CCDS DB by Protein ID:NP_076027Link to BLAST:NP_076027.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076027.1 421 Q9ESW4-1 421 100% 0 0

Chromosomal Locations for CCDS 20027.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 40329499 40329599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40347412 40347451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40352353 40352432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40357045 40357120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40364275 40364367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40366741 40366773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40368581 40368675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40376222 40376291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40381204 40381283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40383760 40383817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40386814 40386961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40387444 40387541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40392653 40392723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40394614 40394698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40395725 40395862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGACTGCATTCTTTAAAACGCTTCGAAATCATTGGAAGAAAACTACAGCTGGGCTCTGTTTGCTGACAT
GGGGAGGTCACTGGCTCTACGGGAAGCACTGTGATAACCTGCTAAGAAGAGCAGCCTGTCAAGAAGCTCA
GGTGTTTGGCAACCAGCTCATTCCTCCCAATGCACAAGTGAAGAAAGCCACCGTCTTTCTCAATCCCGCA
GCTTGCAAAGGCAAAGCCAGAACTCTATTTGAAAAAAATGCTGCTCCAATTTTACACCTGTCTGGCATGG
ATGTGACTGTTGTCAAGACGGATTATGAGGGACAAGCCAAGAAGCTCTTGGAGTTGATGGAAAGCACTGA
TGTGATCATTGTTGCTGGAGGAGACGGCACACTGCAGGAGGTTGTTACTGGAGTACTGAGAAGAACAGAT
GAGGCTACCTTCAGTAAGATTCCCATTGGATTTATCCCGCTGGGACAGACCAGTAGTTTGAGTCACACTC
TCTTTGCTGAAAGTGGAAACAAAGTCCAACATATTACAGACGCCACACTTGCCATTGTGAAAGGAGAGAC
TGTTCCACTTGATGTCTTGCAGATCAAGGGTGAAAAAGAACAACCTGTGTATGCAATGACTGGCCTCCGG
TGGGGATCTTTCAGAGATGCTGGCGTCAAAGTTAGCAAGTACTGGTATCTTGGTCCACTAAAAACCAAAG
CAGCCCACTTTTTCAGCACTCTTCAGGAATGGCCTCAGACTCATCAAGCCTCCATCTCTTACACGGGACC
TAGAGAGAGACCTCCCATTGAGCCTGAAGAGACTCCTCCCAGGCCGTCTCTGTATAGGAGAATATTACGC
AGGCTTGCCTCATTCTGGGCACAGCCACAGGATGCCTCCTCCCGAGAGGTAAGCCCTGAGGTCTGGAAAG
ATGTACAACTGTCCACCATTGAACTGTCCATCACAACCCGAAACACCCAACTTGACCTGATGAGCAAAGA
GGATTTTATGAACATTTGCATTGAACCTGACACTGTCAGCAAAGGAGATTTCATAATCATAGGAAGTAAG
AAGGTGAGAGACCCTGGCCTGCGTGCAGCTGGCACCGAGTGCCTCCAAGCCAGCCACTGTACTCTGGTTC
TTCCTGAGGGAACTGAGGGCTCCTTCAGCATTGACAGCGAGGAGTACGAAGCCATGCCGGTGGAGGTCAA
ACTACTGCCCAGAAAGCTGCGGTTCTTCTGTGATCCGAGGAAGAGAGAGCAAATGCTGCCGAGCACATCC
CAGTGA

Translation (421 aa):
MTAFFKTLRNHWKKTTAGLCLLTWGGHWLYGKHCDNLLRRAACQEAQVFGNQLIPPNAQVKKATVFLNPA
ACKGKARTLFEKNAAPILHLSGMDVTVVKTDYEGQAKKLLELMESTDVIIVAGGDGTLQEVVTGVLRRTD
EATFSKIPIGFIPLGQTSSLSHTLFAESGNKVQHITDATLAIVKGETVPLDVLQIKGEKEQPVYAMTGLR
WGSFRDAGVKVSKYWYLGPLKTKAAHFFSTLQEWPQTHQASISYTGPRERPPIEPEETPPRPSLYRRILR
RLASFWAQPQDASSREVSPEVWKDVQLSTIELSITTRNTQLDLMSKEDFMNICIEPDTVSKGDFIIIGSK
KVRDPGLRAAGTECLQASHCTLVLPEGTEGSFSIDSEEYEAMPVEVKLLPRKLRFFCDPRKREQMLPSTS
Q


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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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