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Report for CCDS12468.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12468.1 Public Homo sapiens 19 RBM42 24 110 108 CCDS HistoryNCBI Gene:79171Re-query CCDS DB by CCDS ID:12468.1Re-query CCDS DB by GeneID:79171See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12468.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262633.9 ENSP00000262633.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262633.9Link to Ensembl Protein Viewer:ENSP00000262633.3Re-query CCDS DB by Nucleotide ID:ENST00000262633Re-query CCDS DB by Protein ID:ENSP00000262633
Original member Current member NCBI NM_024321.5 NP_077297.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024321.5Link to Protein Sequence:NP_077297.2Re-query CCDS DB by Nucleotide ID:NM_024321Re-query CCDS DB by Protein ID:NP_077297Link to BLAST:NP_077297.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077297.2 480 Q9BTD8-1 480 100% 0 0

Chromosomal Locations for CCDS 12468.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 35629154 35629281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35629520 35629673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35631140 35631224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35631331 35631405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35632936 35633001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35633077 35633252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35633687 35634019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35634256 35634373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35637158 35637352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35637442 35637554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGGCTGGGGCGGGGCCAGCCCCGGGACTCCCGGGTGCAGGAGGACCCGTGGTCCCGGGTCCTGGCGCTG
GCATCCCGGGCAAAAGCGGCGAGGAACGCTTGAAGGAAATGGAGGCGGAGATGGCCCTGTTTGAGCAGGA
AGTTCTGGGGGCTCCAGTACCTGGAATCCCAACTGCTGTGCCTGCGGTGCCCACTGTCCCCACGGTCCCC
ACAGTAGAAGCGATGCAGGTCCCAGCGGCTCCTGTGATCCGCCCAATTATCGCGACCAACACATACCAGC
AGGTCCAGCAGACTCTGGAGGCCCGAGCAGCTGCTGCAGCCACAGTAGTTCCTCCCATGGTGGGTGGCCC
TCCTTTTGTAGGCCCTGTTGGCTTTGGCCCTGGTGATCGGAGTCACCTGGACAGCCCAGAGGCTCGAGAA
GCCATGTTCCTGCGGCGGGCAGCTGTGGCCCCCCAGAGGGCCCCTATCCTGCGTCCAGCCTTCGTCCCCC
ACGTGCTACAGAGAGCAGATTCCGCTCTCTCCTCTGCAGCAGCCGGCCCCCGCCCTATGGCCCTACGGCC
CCCTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCTGGACCACCCATGATGCTGCCACCAATG
GCTCGGGCTCCAGGGCCCCCGCTGGGCTCCATGGCTGCACTGAGGCCCCCTCTGGAAGAGCCAGCAGCAC
CCCGAGAGCTGGGCCTAGGCCTGGGGTTGGGCCTGAAAGAGAAGGAAGAGGCAGTGGTGGCGGCGGCGGC
TGGGCTGGAGGAGGCTAGCGCGGCTGTGGCCGTGGGGGCAGGAGGTGCCCCAGCTGGCCCTGCAGTCATT
GGGCCCAGCCTGCCGCTGGCCCTGGCCATGCCATTGCCCGAGCCTGAGCCCCTGCCCCTCCCGTTGGAGG
TCGTCCGCGGCCTCCTGCCCCCGCTGCGCATTCCTGAACTCCTGTCCCTGCGTCCTCGGCCCCGGCCCCC
TCGGCCAGAGCCACCCCCAGGCCTCATGGCTCTTGAGGTCCCAGAGCCCCTGGGTGAAGACAAGAAGAAG
GGGAAGCCAGAGAAATTGAAACGGTGCATTCGCACAGCGGCAGGGAGCAGCTGGGAGGACCCCAGCCTGC
TGGAGTGGGATGCAGATGACTTCCGGATCTTCTGTGGGGATCTGGGCAATGAGGTGAACGATGACATCTT
GGCACGCGCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGATCCGTGACAAGCGCACAGGCAAG
ACCAAGGGCTACGGCTTCGTCAGCTTCAAGGACCCCAGCGACTACGTGCGCGCCATGCGTGAGATGAATG
GGAAGTATGTGGGCTCGCGCCCCATCAAGCTTCGCAAGAGCATGTGGAAGGACCGGAATCTGGACGTGGT
CCGCAAGAAGCAGAAGGAAAAGAAGAAGCTGGGCCTGAGATAG

Translation (480 aa):
MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAVPAVPTVPTVP
TVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPGDRSHLDSPEARE
AMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPM
ARAPGPPLGSMAALRPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVI
GPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKK
GKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK
TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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