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Report for CCDS21083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21083.1 Public Mus musculus 7 Tbcb 23 108 98 CCDS HistoryNCBI Gene:66411Re-query CCDS DB by CCDS ID:21083.1Re-query CCDS DB by GeneID:66411See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21083.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006254.5 ENSMUSP00000006254.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006254.5Link to Ensembl Protein Viewer:ENSMUSP00000006254.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000006254Re-query CCDS DB by Protein ID:ENSMUSP00000006254
Original member Current member NCBI NM_025548.4 NP_079824.2 Accepted alive Link to Nucleotide Sequence:NM_025548.4Link to Protein Sequence:NP_079824.2Re-query CCDS DB by Nucleotide ID:NM_025548Re-query CCDS DB by Protein ID:NP_079824Link to BLAST:NP_079824.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079824.2 244 Q9D1E6 244 100% 0 0

Chromosomal Locations for CCDS 21083.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30224233 30224347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30224473 30224545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30226844 30227035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30227604 30227700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30231126 30231269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30231580 30231693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGGAGGTGACGGGGATATCGGCGCCCACCGTGATGGTTTTCATCAGCAGCTCCCTCAACAGCTTCCGTT
CGGAGAAGCGATACAGTCGTAGCCTCACCATCGCAGAGTTCAAGTGTAAACTGGAGCTGGTGGTGGGCAG
CCCTGCTTCCTGCATGGAACTGGAGCTATATGGAGCAGACGACAAGTTCTACAGCAAGTTGGATCAGGAG
GATGCACTGCTGGGCTCCTATCCTGTGGATGACGGCTGTCGCATCCATGTCATTGACCACAGTGGCGTCC
GGCTCGGAGAGTATGAGGATGTGTCCAAAGTGGAGAAATACGAGATCTCACCAGAAGCTTACGAACGGAG
GCAGAACACAGTTCGATCCTTCATGAAACGCAGCAAGCTAGGCCCGTACAATGAAGAACTCCGGGCCCAG
CAAGAGGCAGAGGCTGCCCAGCGTCTCAGTGAGGAGAAGGCCCAAGCCAGTGCCATCTCTGTGGGGAGCC
GTTGTGAGGTGCGGGCACCCGACCACTCCCTTCGCAGGGGCACTGTCATGTATGTAGGACTCACAGATTT
CAAGCCAGGCTACTGGGTTGGTGTCCGATATGATGAGCCGTTAGGAAAAAACGATGGCAGTGTGAATGGG
AAACGCTACTTTGAATGCCAGGCCAAGTATGGTGCCTTTGTAAAGCCATCAGCTGTCACCGTAGGAGATT
TCCCAGAGGAGGACTACGGGTTGGACGAGATGTGA

Translation (244 aa):
MEVTGISAPTVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE
DALLGSYPVDDGCRIHVIDHSGVRLGEYEDVSKVEKYEISPEAYERRQNTVRSFMKRSKLGPYNEELRAQ
QEAEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNG
KRYFECQAKYGAFVKPSAVTVGDFPEEDYGLDEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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