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Report for CCDS18431.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18431.1 Public Mus musculus 4 Tceanc2 23 108 98 CCDS HistoryNCBI Gene:66526Re-query CCDS DB by CCDS ID:18431.1Re-query CCDS DB by GeneID:66526See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18431.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030362.11 ENSMUSP00000030362.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030362.11Link to Ensembl Protein Viewer:ENSMUSP00000030362.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030362Re-query CCDS DB by Protein ID:ENSMUSP00000030362
Original member Current member EBI ENSMUST00000058585.13 ENSMUSP00000054142.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058585.13Link to Ensembl Protein Viewer:ENSMUSP00000054142.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058585Re-query CCDS DB by Protein ID:ENSMUSP00000054142
Original member Current member EBI ENSMUST00000057043.9 ENSMUSP00000059741.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057043.9Link to Ensembl Protein Viewer:ENSMUSP00000059741.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000057043Re-query CCDS DB by Protein ID:ENSMUSP00000059741
Original member Current member NCBI NM_025617.2 NP_079893.1 Accepted alive Link to Nucleotide Sequence:NM_025617.2Link to Protein Sequence:NP_079893.1Re-query CCDS DB by Nucleotide ID:NM_025617Re-query CCDS DB by Protein ID:NP_079893Link to BLAST:NP_079893.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079893.1 207 Q8R2M0 207 100% 0 0

Chromosomal Locations for CCDS 18431.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 107139611 107139799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107147515 107147708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107165548 107165689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107177565 107177663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGGATAAATTCGTCATTCGAACGCCTAGGATCCAGAATAGCCCGAAGAAGAAACTCGGAGAAAAGGTTT
ACAAGCAAGCCACGATTGAGTCGTTGAAGAGAGTTGTGGTTATAGAAGACATAAAAAGATGGAAAACTAT
GTTGGAGCTTCCTGATCAAACCAAAGAAAACCTAGTTGCTGCCTTACAAGAATTAAAGAAGAAAATGCCC
TCGAGGGAGGTGTTGAGATCCACAAGGATAGGTCATGCTGTGAACAAGATGCGCAGGCACTCGGACCCAG
AGGTGGCTGGTCTTGCCAAAGAAGTTTACACTGAGTGGAAGACTTTCATTGAAAAACATTTGGACAGACC
TTCTATTGAAGTCCGGAGCGATCCAAAAACTGAGTCATTTAGAAAAAATGCCCAGAAATTACTTTCAGAA
GCCTTGGAATTGAAGATGGATCACCTACTGGTTGAAAATATTGAGCGGGAAACGTTTCATCTCTGCTCCC
GGCTCATTAACGGGCCCTACCGGAGGACGGTACGCGCTCTGGTCTTCACATTAAAGCACCGAGCTGAGAT
CCGGGAGCAGGTGAAGAGCGGAGCGCTGCCGGTCGGCACGTTTGTACAGACCCACAAAAAGTGA

Translation (207 aa):
MDKFVIRTPRIQNSPKKKLGEKVYKQATIESLKRVVVIEDIKRWKTMLELPDQTKENLVAALQELKKKMP
SREVLRSTRIGHAVNKMRRHSDPEVAGLAKEVYTEWKTFIEKHLDRPSIEVRSDPKTESFRKNAQKLLSE
ALELKMDHLLVENIERETFHLCSRLINGPYRRTVRALVFTLKHRAEIREQVKSGALPVGTFVQTHKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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