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Report for CCDS26214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26214.1 Public Mus musculus 13 Calml3 23 108 98 CCDS HistoryNCBI Gene:70405Re-query CCDS DB by CCDS ID:26214.1Re-query CCDS DB by GeneID:70405See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26214.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077698.4 ENSMUSP00000076880.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077698.4Link to Ensembl Protein Viewer:ENSMUSP00000076880.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077698Re-query CCDS DB by Protein ID:ENSMUSP00000076880
Original member Current member NCBI NM_027416.3 NP_081692.1 Accepted alive Link to Nucleotide Sequence:NM_027416.3Link to Protein Sequence:NP_081692.1Re-query CCDS DB by Nucleotide ID:NM_027416Re-query CCDS DB by Protein ID:NP_081692Link to BLAST:NP_081692.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081692.1 149 Q9D6P8 149 100% 0 0

Chromosomal Locations for CCDS 26214.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 3803754 3804203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGGCCGACCAGCTGACTGAGGAGCAAATCGCCGAGTTCAAAGAGGCTTTCTCTCTGTTTGACAAGGATG
GGGATGGCAGTATCACCACCCAAGAATTGGGCACTGTCATGCGGTCCCTGGGTCAGAACCCCACAGAGGC
TGAGCTTCAAGGCATGGTGAATGAAATTGACAAAGATGGAAACGGCACCGTGGACTTCCCCGAGTTCCTG
ACAATGATGTCCAGGAAGATGAAAGACACTGACAGCGAGGAGGAGATCCGAGAGGCCTTCCGAGTGTTCG
ACAAGGATGGCAATGGCTTCGTCAGTGCAGCCGAGCTGAGGCACGTGATGACCAAGCTGGGGGAGAAGCT
GAGCGATGAGGAAGTGGACGAAATGATACAGGCGGCAGATACAGATGGTGATGGGCAAGTGAACTATGAG
GAGTTTGTCCACATGCTGGTGTCCAAATGA

Translation (149 aa):
MADQLTEEQIAEFKEAFSLFDKDGDGSITTQELGTVMRSLGQNPTEAELQGMVNEIDKDGNGTVDFPEFL
TMMSRKMKDTDSEEEIREAFRVFDKDGNGFVSAAELRHVMTKLGEKLSDEEVDEMIQAADTDGDGQVNYE
EFVHMLVSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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