NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42321.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42321.1 Public Homo sapiens 17 KRTAP1-5 24 110 108 CCDS HistoryNCBI Gene:83895Re-query CCDS DB by CCDS ID:42321.1Re-query CCDS DB by GeneID:83895See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42321.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361883.6 ENSP00000355302.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361883.6Link to Ensembl Protein Viewer:ENSP00000355302.5Re-query CCDS DB by Nucleotide ID:ENST00000361883Re-query CCDS DB by Protein ID:ENSP00000355302
Original member Current member NCBI NM_031957.2 NP_114163.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031957.2Link to Protein Sequence:NP_114163.1Re-query CCDS DB by Nucleotide ID:NM_031957Re-query CCDS DB by Protein ID:NP_114163Link to BLAST:NP_114163.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114163.1 174 Q9BYS1 174 100% 0 0

Chromosomal Locations for CCDS 42321.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 41026631 41027155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGACCTGCTGCCAGACCAGCTTCTGTGGATATCCCAGCTTCTCCATCAGTGGGACCTGTGGCTCCAGCT
GCTGCCAGCCAAGCTGCTGTGAGACCAGCTGCTGCCAGCCACGCAGCTGCCAGACTAGCTTCTGCGGATT
TCCCAGCTTCTCAACCAGTGGGACCTGCAGCTCCAGTTGCTGCCAGCCAAGCTGCTGTGAGACCAGCTGC
TGCCAGCCAAGCTGCTGTGAGACCAGCTGCTGCCAGCCAAGCTGCTGCCAGATCAGCTCCTGCGGAACTG
GCTGTGGCATTGGTGGTGGCATCAGCTATGGCCAGGAGGGCAGCAGTGGAGCTGTGAGCACCCGTATCAG
GTGGTGCCGCCCAGACAGTCGTGTGGAGGGCACCTACCTACCCCCCTGCTGTGTGGTGAGCTGCACGCCC
CCATCCTGCTGCCAACTGCACCATGCCCAGGCCTCCTGCTGCCGCCCGTCCTACTGTGGACAGTCCTGCT
GCCGCCCAGTCTGCTGCTGTGAGCCCACTTGCTGA

Translation (174 aa):
MTCCQTSFCGYPSFSISGTCGSSCCQPSCCETSCCQPRSCQTSFCGFPSFSTSGTCSSSCCQPSCCETSC
CQPSCCETSCCQPSCCQISSCGTGCGIGGGISYGQEGSSGAVSTRIRWCRPDSRVEGTYLPPCCVVSCTP
PSCCQLHHAQASCCRPSYCGQSCCRPVCCCEPTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH