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Report for CCDS52627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52627.1 Public Mus musculus 8 Zfp423 23 108 98 CCDS HistoryNCBI Gene:94187Re-query CCDS DB by CCDS ID:52627.1Re-query CCDS DB by GeneID:94187See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52627.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109655.8 ENSMUSP00000105282.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109655.8Link to Ensembl Protein Viewer:ENSMUSP00000105282.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109655Re-query CCDS DB by Protein ID:ENSMUSP00000105282
Original member Current member NCBI NM_033327.2 NP_201584.2 Accepted alive Link to Nucleotide Sequence:NM_033327.2Link to Protein Sequence:NP_201584.2Re-query CCDS DB by Nucleotide ID:NM_033327Re-query CCDS DB by Protein ID:NP_201584Link to BLAST:NP_201584.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_201584.2 1292 Q80TS5-1 1292 100% 0 0

Chromosomal Locations for CCDS 52627.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 87662478 87662507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 87686429 87686544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 87687956 87688087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 87773567 87773651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 87780199 87783413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 87859284 87859484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 87904489 87904548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 87959196 87959235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3879 nt):
ATGTCCAGGCGGAAGCAGGCGAAGCCGCGATCGGTGAAAGTTGAAGAGGGGGAGGCCTCGGACTTCTCGC
TGGCCTGGGATTCCTCTGTGGCAGCAGCAGGAGGCCTGGAAGGAGAGCCAGAGTGTGATCGGAAAACCAG
CCGTGCGCTGGAAGACAGGAACAGCGTGACAAGTCAAGAGGAGAGAAATGAGGACGATGAAGACGTGGAA
GATGAGTCAATTTACACCTGCGATCACTGTCAGCAGGACTTCGAGTCTCTGGCAGACCTGACGGACCACC
GGGCCCACCGCTGTCCTGGAGATGGTGATGACGACCCACAGCTCTCCTGGGTGGCTTCATCTCCCTCCAG
CAAGGATGTTGCGTCACCTACGCAGATGATAGGAGATGGTTGTGACCTCGGCCTCGGCGAGGAGGAAGGC
GGCACCGGCCTGCCCTACCCTTGCCAGTTCTGCGACAAGTCCTTCATCCGCCTGAGCTACTTGAAGAGGC
ATGAACAGATCCACAGCGACAAGCTGCCGTTCAAGTGCACCTTCTGCAGCCGCCTCTTCAAACACAAGAG
GAGCCGAGACCGGCACATCAAGCTGCACACGGGCGACAAGAAGTACCACTGTCACGAGTGCGAGGCAGCT
TTCTCCCGCAGCGACCACCTCAAGATCCACCTGAAGACCCACAGCTCCAGCAAGCCGTTCAAGTGCAGCG
TGTGCAAGCGCGGCTTCTCCTCCACCAGCTCCCTGCAGAGCCACATGCAGGCCCACAAGAAGAACAAGGA
ACACCTGGCCAAGTCGGAGAAGGAAGCCAAGAAGGACGACTTCATGTGCGACTACTGCGAGGATACCTTT
AGCCAGACAGAGGAGCTGGAGAAGCACGTGCTCACCCTCCACCCGCAGCTCTCAGAGAAGGCGGATCTAC
AGTGCATCCACTGCCCAGAGGTCTTTGTTGATGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCACGC
CAACCAGAAACACAAGTGCCCCATGTGCCCTGAGCAGTTCTCCTCTGTGGAGGGTGTGTACTGCCACCTG
GACAGCCACCGGCAGCCCGACTCCAGTAACCACAGCGTCAGCCCTGACCCTGTGCTGGGCAGTGTGGCTT
CCATGAGCAGTGCTACACCTGACTCCAGCGCCTCTGTGGAGCGCGGGTCCACGCCAGACTCCACCTTGAA
GCCACTGAGGGGGCAGAAGAAGATGCGGGATGATGGGCAGAGCTGGCCCAAGGTCGTCTACAGCTGCCCC
TATTGTTCTAAGCGGGACTTTACCAGCCTGGCTGTGCTAGAGATTCATCTGAAGACCATTCACGCGGATA
AACCTCAGCAGAGTCACACGTGTCAGATCTGCCTTGACTCCATGCCCACGCTCTACAACCTCAATGAGCA
TGTGCGCAAGCTGCACAAGAGCCACGCCTACCCCGTCATGCAGTTTGGCAACATCTCTGCCTTCCACTGC
AACTACTGCCCCGAGATGTTTGCTGACATCAACAGCCTGCAGGAGCACATTCGAGTCTCGCACTGTGGCC
CCAATGCCAACCCCCCTGATGGGAATAATGCTTTCTTCTGCAACCAGTGCTCCATGGGCTTCCTCACCGA
GTCCTCGCTCACAGAGCACATCCAACAGGCGCATTGCAGTGTGGGGAGCACCAAGCTGGAGTCTCCTGTT
GTTCAGCCCACACAGTCCTTCATGGAGGTCTACTCCTGCCCTTACTGTACCAACTCCCCTATCTTTGGCT
CCATCCTGAAGCTCACTAAACACATTAAAGAGAACCACAAGAACATCCCGCTGGCACACAGCAAGAAGTC
CAAGGCTGAGCAGAGCCCAGTCTCCTCCGACGTCGAGGTGTCTTCCCCGAAACGACAGCGCCTCTCGGGG
AGCGCCAACTCCATCTCTAATGGCGAGTACCCCTGCAATCAGTGCGACCTCAAGTTCTCCAACTTCGAGA
GCTTCCAGACCCACCTGAAGCTGCACCTGGAGCTGCTGCTTCGGAAACAGGCCTGCCCCCAGTGCAAAGA
GGACTTCGACTCTCAGGAGTCCCTCCTGCAGCATCTGACGGTGCATTACATGACTACATCCACCCACTAC
GTGTGCGAGAGCTGTGACAAGCAGTTCTCCTCGGTGGATGACCTACAGAAGCACCTGCTGGACATGCACA
CCTTTGTGCTATACCACTGCACGCTGTGTCAGGAGGTCTTCGACTCCAAGGTGTCCATCCAGGTGCACCT
GGCCGTGAAGCACAGCAACGAGAAGAAGATGTACCGCTGCACAGCCTGCAACTGGGACTTCCGCAAGGAG
GCTGACCTGCAGGTGCACGTCAAACACAGCCACCTCGGCAACCCGGCCAAGGCCCACAAGTGCATCTTCT
GCGGCGAGACCTTCAGCACCGAGGTGGAGCTGCAGTGCCACATCACCACACACAGCAAGAAGTACAACTG
CAGGTTCTGCAGCAAGGCCTTCCATGCCGTCATCCTGCTGGAGAAGCACCTGCGGGAGAAGCACTGCGTG
TTTGACGCTGCCGCGGAGAATGGCACGGCCAACGGGGTGCCCCCCACCTCCACCAAGAAGGCAGAGCCCG
CCGACCTGCAGGGCATGCTGCTCAAGAATCCTGAGGCGCCGAACAGCCACGAGGCCAGTGAGGATGACGT
GGACGCATCAGAGCCCATGTATGGCTGTGACATCTGCGGTGCAGCCTACACCATGGAGGTGTTGCTGCAG
AACCACCGCCTCCGGGATCACAACATCCGGCCCGGCGAGGACGACGGCTCACGCAAGAAGGCAGAATTCA
TAAAGGGCAGCCATAAGTGTAACGTGTGCTCTCGGACTTTCTTCTCGGAGAACGGGCTCCGGGAACACCT
GCAGACGCACCGGGGCCCTGCCAAGCACTACATGTGTCCCATCTGTGGCGAGCGCTTCCCCTCGCTGCTG
ACACTCACCGAGCACAAGGTGACCCACAGCAAGAGTCTGGACACGGGCACCTGTCGCATCTGCAAAATGC
CACTGCAGAGTGAGGAGGAGTTCATTGAGCACTGCCAGATGCACCCCGACTTACGGAACTCCCTCACCGG
CTTCCGCTGTGTGGTCTGTATGCAGACTGTCACCTCGACGCTGGAACTCAAGATCCATGGCACCTTTCAC
ATGCAGAAGCTGGCTGGCAGCTCAGCTGCCTCCTCCCCCAATGGCCAGGGACTGCAGAAGCTCTACAAAT
GCGCCCTGTGCCTCAAAGAGTTCCGTAGCAAGCAGGACCTGGTCAGGCTTGATGTCAATGGGCTGCCCTA
TGGCCTGTGTGCCGGCTGCATGGCCCGGAGTGCCAATGGACAGGTGGGTGGCCTGGCCCCACCCGAACCT
GCTGACCGGCCCTGTGCCGGCCTCCGCTGCCCTGAATGTAACGTGAAGTTCGAGAGTGCTGAGGACCTGG
AGAGCCACATGCAGGTGGACCACCGTGATCTTACACCAGAGACCAGTGGGCCCCGGAAAGGTGCCCAGAC
GTCACCAGTGCCCAGGAAGAAGACGTACCAGTGTATCAAGTGCCAGATGACGTTCGAGAACGAGAGAGAG
ATTCAGATCCACGTCGCCAACCACATGATCGAGGAAGGCATTAACCATGAGTGTAAACTGTGCAACCAGA
TGTTCGACTCCCCAGCCAAGCTCCTCTGCCACCTCATTGAGCACAGCTTCGAGGGCATGGGCGGTACCTT
CAAGTGCCCCGTCTGCTTCACAGTCTTCGTCCAGGCCAACAAGCTGCAACAGCATATCTTTGCCGTGCAC
GGGCAGGAGGACAAAATCTACGACTGCTCGCAGTGCCCACAGAAGTTTTTCTTCCAGACAGAGTTGCAGA
ACCACACGATGAGCCAGCACGCACAGTGA

Translation (1292 aa):
MSRRKQAKPRSVKVEEGEASDFSLAWDSSVAAAGGLEGEPECDRKTSRALEDRNSVTSQEERNEDDEDVE
DESIYTCDHCQQDFESLADLTDHRAHRCPGDGDDDPQLSWVASSPSSKDVASPTQMIGDGCDLGLGEEEG
GTGLPYPCQFCDKSFIRLSYLKRHEQIHSDKLPFKCTFCSRLFKHKRSRDRHIKLHTGDKKYHCHECEAA
FSRSDHLKIHLKTHSSSKPFKCSVCKRGFSSTSSLQSHMQAHKKNKEHLAKSEKEAKKDDFMCDYCEDTF
SQTEELEKHVLTLHPQLSEKADLQCIHCPEVFVDESTLLAHIHQAHANQKHKCPMCPEQFSSVEGVYCHL
DSHRQPDSSNHSVSPDPVLGSVASMSSATPDSSASVERGSTPDSTLKPLRGQKKMRDDGQSWPKVVYSCP
YCSKRDFTSLAVLEIHLKTIHADKPQQSHTCQICLDSMPTLYNLNEHVRKLHKSHAYPVMQFGNISAFHC
NYCPEMFADINSLQEHIRVSHCGPNANPPDGNNAFFCNQCSMGFLTESSLTEHIQQAHCSVGSTKLESPV
VQPTQSFMEVYSCPYCTNSPIFGSILKLTKHIKENHKNIPLAHSKKSKAEQSPVSSDVEVSSPKRQRLSG
SANSISNGEYPCNQCDLKFSNFESFQTHLKLHLELLLRKQACPQCKEDFDSQESLLQHLTVHYMTTSTHY
VCESCDKQFSSVDDLQKHLLDMHTFVLYHCTLCQEVFDSKVSIQVHLAVKHSNEKKMYRCTACNWDFRKE
ADLQVHVKHSHLGNPAKAHKCIFCGETFSTEVELQCHITTHSKKYNCRFCSKAFHAVILLEKHLREKHCV
FDAAAENGTANGVPPTSTKKAEPADLQGMLLKNPEAPNSHEASEDDVDASEPMYGCDICGAAYTMEVLLQ
NHRLRDHNIRPGEDDGSRKKAEFIKGSHKCNVCSRTFFSENGLREHLQTHRGPAKHYMCPICGERFPSLL
TLTEHKVTHSKSLDTGTCRICKMPLQSEEEFIEHCQMHPDLRNSLTGFRCVVCMQTVTSTLELKIHGTFH
MQKLAGSSAASSPNGQGLQKLYKCALCLKEFRSKQDLVRLDVNGLPYGLCAGCMARSANGQVGGLAPPEP
ADRPCAGLRCPECNVKFESAEDLESHMQVDHRDLTPETSGPRKGAQTSPVPRKKTYQCIKCQMTFENERE
IQIHVANHMIEEGINHECKLCNQMFDSPAKLLCHLIEHSFEGMGGTFKCPVCFTVFVQANKLQQHIFAVH
GQEDKIYDCSQCPQKFFFQTELQNHTMSQHAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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