NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28428.1 Public Mus musculus 17 Vmn1r229 23 108 98 CCDS HistoryNCBI Gene:171224Re-query CCDS DB by CCDS ID:28428.1Re-query CCDS DB by GeneID:171224See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28428.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076759.2 ENSMUSP00000076045.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076759.2Link to Ensembl Protein Viewer:ENSMUSP00000076045.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000076759Re-query CCDS DB by Protein ID:ENSMUSP00000076045
Original member Current member EBI ENSMUST00000233712.1 ENSMUSP00000156596.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233712.1Link to Ensembl Protein Viewer:ENSMUSP00000156596.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233712Re-query CCDS DB by Protein ID:ENSMUSP00000156596
Original member Current member EBI ENSMUST00000232810.1 ENSMUSP00000156686.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232810.1Link to Ensembl Protein Viewer:ENSMUSP00000156686.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232810Re-query CCDS DB by Protein ID:ENSMUSP00000156686
Original member Current member EBI ENSMUST00000232852.1 ENSMUSP00000156964.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232852.1Link to Ensembl Protein Viewer:ENSMUSP00000156964.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232852Re-query CCDS DB by Protein ID:ENSMUSP00000156964
Original member Current member NCBI NM_134190.1 NP_598951.1 Accepted alive Link to Nucleotide Sequence:NM_134190.1Link to Protein Sequence:NP_598951.1Re-query CCDS DB by Nucleotide ID:NM_134190Re-query CCDS DB by Protein ID:NP_598951Link to BLAST:NP_598951.1

Chromosomal Locations for CCDS 28428.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 20814495 20815415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGATTTTGGGAACCTGGCAATGGGAATTGTACTCTCACTTCAGAGTGCACTTGGTATTCTGGGAAACT
TCTCTCTTCTTTTCTACTATTTAGTCCTTTATAACAAAGAACGCACATTAAAGATCATAGATATAATACT
TATACATGTATTCACATCAAACTCCTTGATTATTTTCTCCAAAGGACTTCCAGAGGTACTTGCAGTTTTT
GGATGGAATGACTTATTCGATGATGTTGGGTGTAAACTAATTATGTATGTTAGAAGAGTTTCCAGGAGTA
TGTCAATTAGCATGACCTGTCTCTTGAGTGTCTTTCAGGCAATCACCATAAGCACCAGGAACTCCTGCTG
GAAGGAATTTAAAGAGCAAACAGCAAAGTTCATGGGCCTGTTCATTTCTCTCTGCTGGATCCTATTCATG
CTAGTAAATATGCTTTTCCCTGTATATACATCAACCAACAGAAATAGCAAAAATAAAACACAAAAAAAAG
ATATTGAATTCTGCCACTCTGTAGGCCGTGACAAAATGGTAGATATAATGTATACAGCATTTTGTGTGTT
TCCTGAAGTCCTGTTTTCTTTGCTCATTGTATCTTCCAGCACCACCATGATAGTCATACTTTATGGACAC
AAAAAGAGGGTTCAACACATCCTCCACACTCATGCTTCCCCTAGGACCTCTGCTGAAAACAGAGCCACAC
AGACCATTCTGATCCTGGTTTGCACCTTTCTAGCATTTTATACACTCTCTTCAGTTTTGCAAGGCTATGT
TGCACTTTCACATGATCCCAGTTGGTGGGTAATGAATATCACGACCATCATTTCTATGGGTTTTCCTGCT
ATAGGCCCATTTGTGATGAGTCGTGATTTCACTGTTTCCAGATTCTGCTTTACCTGTATAGGAAATCTAA
AACTTCCATAA

Translation (306 aa):
MDFGNLAMGIVLSLQSALGILGNFSLLFYYLVLYNKERTLKIIDIILIHVFTSNSLIIFSKGLPEVLAVF
GWNDLFDDVGCKLIMYVRRVSRSMSISMTCLLSVFQAITISTRNSCWKEFKEQTAKFMGLFISLCWILFM
LVNMLFPVYTSTNRNSKNKTQKKDIEFCHSVGRDKMVDIMYTAFCVFPEVLFSLLIVSSSTTMIVILYGH
KKRVQHILHTHASPRTSAENRATQTILILVCTFLAFYTLSSVLQGYVALSHDPSWWVMNITTIISMGFPA
IGPFVMSRDFTVSRFCFTCIGNLKLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH