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Report for CCDS26346.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26346.1 Public Mus musculus 13 H1f3 23 108 98 CCDS HistoryNCBI Gene:14957Re-query CCDS DB by CCDS ID:26346.1Re-query CCDS DB by GeneID:14957See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26346.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045301.8 ENSMUSP00000044395.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045301.8Link to Ensembl Protein Viewer:ENSMUSP00000044395.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000045301Re-query CCDS DB by Protein ID:ENSMUSP00000044395
Original member Current member NCBI NM_145713.4 NP_663759.3 Accepted alive Link to Nucleotide Sequence:NM_145713.4Link to Protein Sequence:NP_663759.3Re-query CCDS DB by Nucleotide ID:NM_145713Re-query CCDS DB by Protein ID:NP_663759Link to BLAST:NP_663759.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663759.3 221 P43277 221 100% 0 0

Chromosomal Locations for CCDS 26346.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23555090 23555755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGTCCGAGACCGCTCCCGCGGCGCCTGCTGCCCCTGCACCTGTGGAGAAGACACCTGTGAAGAAGAAGG
CGAAGAAGACCGGCGCCGCTGCTGGGAAGCGCAAGGCGTCCGGACCCCCGGTGTCCGAGCTCATCACCAA
GGCTGTGGCCGCCTCCAAGGAGCGCAGCGGCGTGTCCCTGGCTGCGCTCAAGAAGGCGCTGGCGGCCGCG
GGGTACGATGTGGAGAAGAACAACAGCCGCATCAAGCTCGGGCTGAAGAGCCTGGTGAGCAAGGGTACCC
TGGTGCAGACCAAGGGCACCGGCGCCTCCGGCTCCTTCAAACTCAACAAGAAGGCGGCTTCCGGTGAGGC
TAAGCCCAAGGCTAAGAAGGCAGGCGCGGCCAAGGCCAAGAAGCCTGCGGGAGCAGCCAAGAAGCCTAAG
AAGGCGACTGGTGCTGCCACACCCAAAAAGACGGCCAAGAAGACTCCGAAGAAGGCGAAGAAGCCTGCGG
CGGCTGCCGGCGCCAAGAAAGTTTCCAAGAGTCCCAAGAAGGTGAAGGCTGCTAAGCCCAAGAAGGCAGC
AAAGAGTCCAGCCAAGGCCAAGGCTCCCAAGGCTAAGGCTTCCAAGCCTAAAGCTTCTAAGCCGAAGGCC
ACCAAGGCAAAGAAGGCTGCCCCTCGCAAGAAGTAG

Translation (221 aa):
MSETAPAAPAAPAPVEKTPVKKKAKKTGAAAGKRKASGPPVSELITKAVAASKERSGVSLAALKKALAAA
GYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKAKKAGAAKAKKPAGAAKKPK
KATGAATPKKTAKKTPKKAKKPAAAAGAKKVSKSPKKVKAAKPKKAAKSPAKAKAPKAKASKPKASKPKA
TKAKKAAPRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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