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Report for CCDS22858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22858.1 Public Mus musculus 9 Or7g31 23 108 98 CCDS HistoryNCBI Gene:258516Re-query CCDS DB by CCDS ID:22858.1Re-query CCDS DB by GeneID:258516See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22858.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077347.2 ENSMUSP00000076569.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077347.2Link to Ensembl Protein Viewer:ENSMUSP00000076569.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000077347Re-query CCDS DB by Protein ID:ENSMUSP00000076569
Original member Current member NCBI NM_146523.1 NP_666734.1 Accepted alive Link to Nucleotide Sequence:NM_146523.1Link to Protein Sequence:NP_666734.1Re-query CCDS DB by Nucleotide ID:NM_146523Re-query CCDS DB by Protein ID:NP_666734Link to BLAST:NP_666734.1

Chromosomal Locations for CCDS 22858.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 19477301 19478248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGAACAACATGGAAAAGAGAAACCAAACAACTTTTCCAGGATTCCTTCTTCTGGGACTGACAGAGGACC
CAAAACTACAGCCTGTCTTTGTCAGTTTGTTCTTTTCTATATATCTGATCACCATCCTGGGAAACCTTCT
TATAATCTTGATTTCCATCTCTGATGCCCATCTTCATACCCCTATGTACTTATTTCTCTCCAATTTGTCC
TTAAATGACATCTGTTTAAGCACAAGCACGATCCCAAAGATGCTGGTGAACATAAAAGAAAATAGTCAAA
GCATTACATACAAAGGCTGCCTCACTCAAATGAGCTTTGTTTTAATTTTTTGTGGCATGGAAAACTGTCT
CCTTGCAGTAATGGCTTATGACCGTTATATTGCTATTTGTCACCCCCTAAGGTACACAGTCATCATGGAA
CCCTGTTTTTGTGTCCTGCTGATTCTATTGTCCCTGCTCATTAGTGTTGTTGATACTTTGATGCACAGCC
TTATGGTGCTCCGACTGTCATTCTGCACACACCTGGAAATATCAAATTTCATCTGTGAACTTCCCCAGAT
CCTCAAGTTGGCCTGTTCTGATACTCTCATTGATAACATATTGATCTATCTTTCTGCATGCATATTTACT
GGTATTCCTATCTCTGGAATAGTTTTTTCTTATGTTCACATAATATCTTCTATTTTGAGAATGTCATCAT
TAGAAGGAAAGCACAAAGCCTTTACCACCTGTGGGTCTCACTTGTCAGTTGTATCCTTGTTTTATGGGAC
AGCTTTTGGGGTATATATTACGTCTATTATTATGGATTCATCCAGGAATACTGCAGTGGCATCAGTGATG
TATTCTGTTGTACCTCAGATGCTGAACCCCTTTATCTACAGTCTGAGGAACAGGGACATGAAAGAAGCTA
TGGGGAAATTCTTCAGTCGGATGGCTTCTTTTCTATGA

Translation (315 aa):
MNNMEKRNQTTFPGFLLLGLTEDPKLQPVFVSLFFSIYLITILGNLLIILISISDAHLHTPMYLFLSNLS
LNDICLSTSTIPKMLVNIKENSQSITYKGCLTQMSFVLIFCGMENCLLAVMAYDRYIAICHPLRYTVIME
PCFCVLLILLSLLISVVDTLMHSLMVLRLSFCTHLEISNFICELPQILKLACSDTLIDNILIYLSACIFT
GIPISGIVFSYVHIISSILRMSSLEGKHKAFTTCGSHLSVVSLFYGTAFGVYITSIIMDSSRNTAVASVM
YSVVPQMLNPFIYSLRNRDMKEAMGKFFSRMASFL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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