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Report for CCDS16328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16328.1 Public Mus musculus 2 Or5d40 23 108 98 CCDS HistoryNCBI Gene:258524Re-query CCDS DB by CCDS ID:16328.1Re-query CCDS DB by GeneID:258524See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16328.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079599.3 ENSMUSP00000078549.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079599.3Link to Ensembl Protein Viewer:ENSMUSP00000078549.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000079599Re-query CCDS DB by Protein ID:ENSMUSP00000078549
Original member Current member EBI ENSMUST00000215996.1 ENSMUSP00000149517.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215996.1Link to Ensembl Protein Viewer:ENSMUSP00000149517.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215996Re-query CCDS DB by Protein ID:ENSMUSP00000149517
Original member Current member NCBI NM_146531.2 NP_666742.2 Accepted alive Link to Nucleotide Sequence:NM_146531.2Link to Protein Sequence:NP_666742.2Re-query CCDS DB by Nucleotide ID:NM_146531Re-query CCDS DB by Protein ID:NP_666742Link to BLAST:NP_666742.2

Chromosomal Locations for CCDS 16328.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88184879 88185817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGATAAACCAGAGTTCTGTAACCACATTTATTCTGGTGGGTTTCTCAGAATATCCACACCTACAGCCAC
CCCTCTTCCTTATGATAATGACCATTTACACAGTCACTCTGGTAGGAAATGTAGGCATAATTTTGGTCAG
AAGGATCAACCCTAAGCTTCACACACCCATGTACTTTTTTCTGAGCCATCTTTCATTTTTGGATATATGT
TATTCTAGTGTATTTACACCAAAATTGTTAGAGATCTTGATTGTGGAACATAGAACTATTTCTTTAAATG
GTTGCATGACACAGTTTTTCTTTGGCTGTGCATGTGTGATTACAGAGATGTTCATGTTAGCAGTGATGGC
CTATGACAGGTTTGTGGCTGTTTGCAACCCCCTGCTCTATACTGTTGCTATGTCTCATCAATTGTGTGCT
CTCCTAGTAGCTGGAAGTTATATGTGGGGAGGTCTGTGTGCTGTGATAATCACATACACTCTTGTAGAGC
TCTCTTATTGTGAACCTGGCATCATTGATCACTTTGGCTGTGAATATTCAGCCATTGTCTCTGTATCCTG
TTCTGACCCCTCCTTCAGCCAGATGGTATGCTTAGTCATTTCCATATTAAGTGAGGGTAGTAGCCTTCTT
ATCACTATGGCCTCCTATGTCTTCATCGTTGTCACAATCATCAAGATGCCTTCTAAAGATGGACTCAGAA
AAGCCTTCTCCACCTGTACTTCACACCTGACTGCCATCAGCATCTTCCATGGGATTATTCTCCTTCTCTA
CTGTATACCCAATGCAAAGAGCTCAAAGCTGCTGGTCAAAGTAGCAACTGTACTCTATACAGTCCTTATA
CCCATGCTGAACCCCCTCATCTACAGCCTAAGGAACAAAGATGTAAAAGAGACAGTCAAGAGGCTCATCA
GCTCAAAATTGCACTCTCAGACAATATAA

Translation (312 aa):
MINQSSVTTFILVGFSEYPHLQPPLFLMIMTIYTVTLVGNVGIILVRRINPKLHTPMYFFLSHLSFLDIC
YSSVFTPKLLEILIVEHRTISLNGCMTQFFFGCACVITEMFMLAVMAYDRFVAVCNPLLYTVAMSHQLCA
LLVAGSYMWGGLCAVIITYTLVELSYCEPGIIDHFGCEYSAIVSVSCSDPSFSQMVCLVISILSEGSSLL
ITMASYVFIVVTIIKMPSKDGLRKAFSTCTSHLTAISIFHGIILLLYCIPNAKSSKLLVKVATVLYTVLI
PMLNPLIYSLRNKDVKETVKRLISSKLHSQTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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