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Report for CCDS17518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17518.1 Public Mus musculus 3 She 23 108 98 CCDS HistoryNCBI Gene:214547Re-query CCDS DB by CCDS ID:17518.1Re-query CCDS DB by GeneID:214547See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17518.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050401.5 ENSMUSP00000059658.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050401.5Link to Ensembl Protein Viewer:ENSMUSP00000059658.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000050401Re-query CCDS DB by Protein ID:ENSMUSP00000059658
Original member NCBI NM_172530.3 NP_766118.3 Updated not alive Link to Nucleotide Sequence:NM_172530.3Link to Protein Sequence:NP_766118.3Re-query CCDS DB by Nucleotide ID:NM_172530Re-query CCDS DB by Protein ID:NP_766118
Current member NCBI NM_172530.4 NP_766118.3 Accepted alive Link to Nucleotide Sequence:NM_172530.4Link to Protein Sequence:NP_766118.3Re-query CCDS DB by Nucleotide ID:NM_172530Re-query CCDS DB by Protein ID:NP_766118Link to BLAST:NP_766118.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766118.3 492 Q8BSD5 492 100% 0 0

Chromosomal Locations for CCDS 17518.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89831504 89832103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89834144 89834270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89849368 89849673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89851609 89851750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89852367 89852486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89854531 89854714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGCGGCGGCCCCCGGCCCCTGGCGCCCCACGGTGTCTCAGCTGGGCCTCCTCACTCTTCTGCTCCGCGG
CCTCGACGCTCCCGGGCCCCCTGATGGCGGCGAAATGGTTCAAGGAGTTCCCGCTTACTCTGAAGACCGC
GTCGGAGCGCGCCCGGCCCGGGGGCGCCGGCGGCAAGCCGCGCAAGAACTCGGAGACTGGCGGCGCGGCG
CCCACCCCGGGCAAGGGCCGGAAGAACTCAGCGGCCGAGCTGGGGGCCAGCAAGGCGAGCAGCGGACCCC
CAAAGGACAGTCGGCTGTCCCGGGACAGCCTGCAGGGTCTGATCCAGGCCGCTGCTGGCAAAGGCCGTAA
GAACTCCCGGGTCACCGCCACCGCCACCGAGGAGGAGCCCCACCGTGGCGCGGTGACCAAGAGCGCGGGC
TGCAGCACCTACATCAGTAGGCTCATCAAGGTGGACACGCAGGAGAAGAATGGGAAGAGCGCCTACCCGG
GCGGTGGCAGCACCAGCAGCTCCAGCAGCTCCTCTTCCTCTGCGTCCTCTTCCCCGTCCTCCCTGGGCCC
TGAGCTGGACAAGGCCAAGATAATGAGACAGCAAGACACGGTCATCATTTTAGAGGACTACGCTGACCCG
TATGATGCCAAACGGACGAAAGGTCAAAGGGATGCGGAGAGAGTGGGTGAGAACGACGGCTACATGGAAC
CGTACGATGCACAACAGATGATAACAGAAATCAGACGCCGTGGTTCCAAAGATCCCCTGGTGAAGGCCCT
CCAGTTGCTTGATGGCCCGAGTGAACCAGGGGAGACTGTGAAGGTGGAGGCCACAGCCAAGAGACGCAGC
TCCAAGGACCTGCTGGGGAAGCCGCCACAACTCTATGACACCCCGTACGAGCCTTCGGAGGGTGGCCAAC
GTGTGGCAGAGGTGAAGACGCGGCCAGCAGACAGCAGGCTACCAGAGGAGGATGATCGGCCCGCTGCTGA
GTATGAACAGCCCTGGGAGTGGAAGAGGGAGCAGATCGCGAGAGCCCTGTCAGTCCAGTTTGAGGGATCT
GATCGACCTCCGGGCAGAGAGGATGCAGGGAGACCGCACCACTGGCAGAAGACCTTGAAGCCGACCCTGT
CAGACCACGGTGATGGGGAGAAGGTGGACCCAGGCCTGGCCCTGGAAAAACAACCTTGGTATCACGGCTC
CATCAGCCGAGCTGAGGCCGAGAGCCGACTACAGCCCTGCAAAGAAGCCGCTTACCTGGTCCGGAACAGT
GAGTCAGGGAACAGCAAGTATTCCATTGCACTGAAGACGAGTCAAGGGTGTGTCCACATCATAGTGGCTC
AGACAAAAGACAACAAATACACACTGAACCAGACGAGCGCTGTGTTTGACAGCATCCCTGAAGTGGTACA
CTATTACTCCAATGCAAAGCTGCCTTTCAAAGGAGCAGAGCACATGACCCTTCTCCATCCAGTGCACAAG
CTCCACTAA

Translation (492 aa):
MRRPPAPGAPRCLSWASSLFCSAASTLPGPLMAAKWFKEFPLTLKTASERARPGGAGGKPRKNSETGGAA
PTPGKGRKNSAAELGASKASSGPPKDSRLSRDSLQGLIQAAAGKGRKNSRVTATATEEEPHRGAVTKSAG
CSTYISRLIKVDTQEKNGKSAYPGGGSTSSSSSSSSSASSSPSSLGPELDKAKIMRQQDTVIILEDYADP
YDAKRTKGQRDAERVGENDGYMEPYDAQQMITEIRRRGSKDPLVKALQLLDGPSEPGETVKVEATAKRRS
SKDLLGKPPQLYDTPYEPSEGGQRVAEVKTRPADSRLPEEDDRPAAEYEQPWEWKREQIARALSVQFEGS
DRPPGREDAGRPHHWQKTLKPTLSDHGDGEKVDPGLALEKQPWYHGSISRAEAESRLQPCKEAAYLVRNS
ESGNSKYSIALKTSQGCVHIIVAQTKDNKYTLNQTSAVFDSIPEVVHYYSNAKLPFKGAEHMTLLHPVHK
LH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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