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Report for CCDS11432.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11432.1 Public Homo sapiens 17 RETREG3 24 110 108 CCDS HistoryNCBI Gene:162427Re-query CCDS DB by CCDS ID:11432.1Re-query CCDS DB by GeneID:162427See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11432.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309428.10 ENSP00000309432.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309428.10Link to Ensembl Protein Viewer:ENSP00000309432.4Re-query CCDS DB by Nucleotide ID:ENST00000309428Re-query CCDS DB by Protein ID:ENSP00000309432
Original member Current member NCBI NM_178126.4 NP_835227.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178126.4Link to Protein Sequence:NP_835227.1Re-query CCDS DB by Nucleotide ID:NM_178126Re-query CCDS DB by Protein ID:NP_835227Link to BLAST:NP_835227.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835227.1 466 Q86VR2-1 466 100% 0 0

Chromosomal Locations for CCDS 11432.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 42581813 42582270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42582674 42582806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42583498 42583580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42585125 42585262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42586053 42586137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42586765 42586891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42587834 42587864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42592056 42592162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42609086 42609324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGGCTGAGGCCGAAGGGGTTCCCACGACCCCAGGCCCGGCTTCGGGGTCGACTTTCAGGGGCCGCCGAG
ATGTGTCAGGCTCCTGGGAGCGGGACCAGCAGGTTGAGGCGGCGCAGCGGGCCCTGGTGGAGGTGCTGGG
GCCTTACGAGCCTCTGCTGAGTCGGGTGCAGGCAGCCCTGGTGTGGGAGCGGCCAGCTAGGAGCGCTCTG
TGGTGCCTGGGGCTGAACGCGGCTTTCTGGTTTTTTGCCCTGACATCTCTTCGTCTTGTGTTTTTACTTG
CATTTGGCTTGATGATCATTGTGTGTATTGATCAATGGAAGAACAAAATCTGGCCTGAAATAAAAGTGCC
AAGACCCGACGCATTAGACAATGAGAGCTGGGGCTTTGTGCACCCTCGGTTGCTCAGCGTGCCCGAGCTC
TGCCACCATGTAGCTGAAGTCTGGGTTAGTGGGACCATTTTCATAAGGAATGTTTTGCTTTTCAAAAAGC
AAAACCCAGGCAAGTTCTGCTTGCTGAGCTGTGGGATACTGACCTTTTTGGCTGTCTTGGGCCGCTACGT
CCCTGGGCTTCTGCTGTCCTACTTGATGCTTGTCACTGTCATGATGTGGCCCCTTGCTGTGTACCACCGA
CTGTGGGATCGAGCATATGTGCGGCTGAAGCCAGCTCTGCAGCGGCTAGACTTCAGTGTCCGTGGCTACA
TGATGTCCAAGCAGAGAGAGAGACAATTACGCCGCAGAGCTCTCCACCCAGAACGAGCCATGGACAACCA
CAGTGACAGCGAAGAGGAGCTTGCTGCCTTCTGTCCTCAGCTGGACGATTCTACTGTTGCCAGGGAATTG
GCCATCACAGACTCTGAGCACTCAGACGCTGAAGTCTCCTGTACAGACAATGGCACATTCAATCTTTCAA
GGGGCCAAACACCTCTAACGGAAGGCTCTGAAGACCTAGATGGTCACAGTGATCCAGAGGAATCCTTTGC
CAGAGACCTTCCAGACTTCCCTTCCATTAATATGGATCCTGCTGGCCTGGATGATGAGGACGACACTAGC
ATTGGCATGCCCAGCTTGATGTACCGTTCTCCGCCAGGGGCTGAGGAGCCCCAGGCCCCACCTGCCAGCC
GGGACGAGGCTGCGCTGCCGGAGCTCCTGCTTGGTGCTCTTCCTGTAGGATCCAACCTCACCAGCAACCT
TGCCAGCCTGGTCTCCCAGGGTATGATTCAGCTGGCCTTGTCAGGGGCCTCCCAACCAGGCCCTTCTGGA
GCACCTGCCCAGAGAGCAACGAGAGGCTTCCTCCGGTCCCCCAGTTCAGACCTGGACACTGATGCTGAGG
GGGATGACTTTGAACTTCTGGACCAGTCGGAGCTGAGTCAGCTGGACCCTGCCAGTTCTAGGAGCCACTG
A

Translation (466 aa):
MAEAEGVPTTPGPASGSTFRGRRDVSGSWERDQQVEAAQRALVEVLGPYEPLLSRVQAALVWERPARSAL
WCLGLNAAFWFFALTSLRLVFLLAFGLMIIVCIDQWKNKIWPEIKVPRPDALDNESWGFVHPRLLSVPEL
CHHVAEVWVSGTIFIRNVLLFKKQNPGKFCLLSCGILTFLAVLGRYVPGLLLSYLMLVTVMMWPLAVYHR
LWDRAYVRLKPALQRLDFSVRGYMMSKQRERQLRRRALHPERAMDNHSDSEEELAAFCPQLDDSTVAREL
AITDSEHSDAEVSCTDNGTFNLSRGQTPLTEGSEDLDGHSDPEESFARDLPDFPSINMDPAGLDDEDDTS
IGMPSLMYRSPPGAEEPQAPPASRDEAALPELLLGALPVGSNLTSNLASLVSQGMIQLALSGASQPGPSG
APAQRATRGFLRSPSSDLDTDAEGDDFELLDQSELSQLDPASSRSH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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