NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13814.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13814.2 Public Homo sapiens 22 C22orf15 24 110 108 CCDS HistoryNCBI Gene:150248Re-query CCDS DB by CCDS ID:13814.2Re-query CCDS DB by GeneID:150248See the combined annotation on chromosome 22 in Sequence Viewer

Public Note for CCDS 13814.1
The coding region has been updated to represent an alternative splice pattern that is more supported by the available transcript data. The update is based on the splice pattern of BU739625.1 and BM713608.1, and is supported by the Swiss-Prot representation, Q8WYQ4.1.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13814.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402217.8 ENSP00000384965.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000402217.8Link to Ensembl Protein Viewer:ENSP00000384965.4Re-query CCDS DB by Nucleotide ID:ENST00000402217Re-query CCDS DB by Protein ID:ENSP00000384965
Original member Current member NCBI NM_182520.3 NP_872326.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182520.3Link to Protein Sequence:NP_872326.2Re-query CCDS DB by Nucleotide ID:NM_182520Re-query CCDS DB by Protein ID:NP_872326Link to BLAST:NP_872326.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872326.2 148 Q8WYQ4-1 148 100% 0 0

Chromosomal Locations for CCDS 13814.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 23763307 23763331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23764087 23764173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23764260 23764397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23764639 23764713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23764793 23764902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23765721 23765732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGTTTATCAAGGTGATGTTTGGGGCTGGCTGCTCGGTGCTGGTGAACACCTCTTGCAGGCTGGTGAACC
TCACCGCCCACCTGAGGCAGAAAGCAGGGTTGCCCCCAGATGCGACCATTGCTCTCCTGGCTGAGGATGG
CAACCTAGTGAGCCTGGAGGAGGACCTGAAGGAAGGGGCTTCCCGGGCCCAGACCATGGGCAACTCCCTA
CTGAAGGAGCGAGCCATATATGTCCTCGTTCGGATCATCAAGGGAGAGGACATGGCCTCCACCCGCTATG
AGTCCCTATTGGAGAACCTGGATGACCATTACCCAGAGCTGGCAGAGGAACTGCGCAGGCTGTCAGGCCT
CTCCTCTGTGGGCCACAACTGGAGGAAGCGTATGGGCACTCGGCGAGGCCGCCATGAGCAAAGCCCCACT
TCAAGGCCCAGAAAGGGCCCTGATTAA

Translation (148 aa):
MFIKVMFGAGCSVLVNTSCRLVNLTAHLRQKAGLPPDATIALLAEDGNLVSLEEDLKEGASRAQTMGNSL
LKERAIYVLVRIIKGEDMASTRYESLLENLDDHYPELAEELRRLSGLSSVGHNWRKRMGTRRGRHEQSPT
SRPRKGPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH