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Report for CCDS52261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52261.1 Public Mus musculus 7 Fancf 23 108 98 CCDS HistoryNCBI Gene:100040608Re-query CCDS DB by CCDS ID:52261.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52261.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169357.1 ENSMUSP00000125812.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169357.1Link to Ensembl Protein Viewer:ENSMUSP00000125812.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169357Re-query CCDS DB by Protein ID:ENSMUSP00000125812
Original member Current member NCBI NM_001115087.1 NP_001108559.1 Accepted alive Link to Nucleotide Sequence:NM_001115087.1Link to Protein Sequence:NP_001108559.1Re-query CCDS DB by Nucleotide ID:NM_001115087Re-query CCDS DB by Protein ID:NP_001108559Link to BLAST:NP_001108559.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108559.1 343 E9Q5Z5 343 100% 0 0

Chromosomal Locations for CCDS 52261.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 51861223 51862254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGAGCCGCTTGTGCAGCAAACCGAGCGATTCTCCGAGCTGTTGGCCGTGTCGTGTGGGTCGCTGGTGA
GCACGTGGGACGCCGAAAAGGTGCGCAGGGCGCTGCAGTGGGCGCGTTATCTGCTCCACGTGTACCGACG
CTTCGCGGGCCGCGGCCGCGTGCGGGAGGCGCTCGAGAGGCGGCTCCCCGCGCGGGGAGGGCCGCTCGGG
CTGCGCAGCTTCGCGGCGCTGGAGTCCGGGGACGCGCGGCTCGCCCTCCGCCTGCTGCGGAACCGCGCGC
TCGCGCCCGCCGCCGCCCGCGCGCTGCCGAGCTTGCTGTTCCCGGGCCCCGCCGCGGACCACCGAGACGA
CGTGCCGCAGTCGCGCCTGGTCCTCCTGGCGCGCCGCGGAAGCGCGCTGCGCCTGCTGTGCCGCCTCGGC
GGGGACGCGCCCAGGAGCGCGCTGCTGCGCACGCACGCGGAGCTGCTGGACGCGCGCCTGCACGAGCTGG
GCGGGGCCGACTCCGCGGCCGCGCGCAAACTCCTGGACACGTTGTGGACGCGCGGGCCGCGGGAGCACGT
GCTCGACGTGACTGCCGAAGCGCTGCTGCTACGCGAGGAAGACCCGGAGCCAGCCCAGGCCACGGACCCT
GCGGGTGCGGATGAGACACAGAAACTACTGCGCTGGCTTCTCGAAAGTCCCGAGGTATTGGCCGCTTTTT
GCCGCCATCTGCCAGCCAAGCGCCTGGCCTCCGTGGCGGGCTGCCACCACGCACTGTCTCGCGCCTACCT
GGACCTGCTCACAACGTGGGCCACGCGGCTGCACTATGATCTGCAAAAGGGTGCCTGGGTCCCTACACAG
ATGGAGGACATGCCCTGGGAAGAGCTGTGCCTAAGGCTGCAGAGCTTGTGCCATGCCCAGCCATTTCTGC
AGGAAGAGGTGCTGGTGACCCTAAGGTCCCGCAAAGCCTTGGATGGAGATTTCGAGGTTCCTGGGATGAG
CATCTGGACAGACCTCCTGGTGGTGCTTGAGTGTGGGATCGTGCTAGAGTAG

Translation (343 aa):
MEPLVQQTERFSELLAVSCGSLVSTWDAEKVRRALQWARYLLHVYRRFAGRGRVREALERRLPARGGPLG
LRSFAALESGDARLALRLLRNRALAPAAARALPSLLFPGPAADHRDDVPQSRLVLLARRGSALRLLCRLG
GDAPRSALLRTHAELLDARLHELGGADSAAARKLLDTLWTRGPREHVLDVTAEALLLREEDPEPAQATDP
AGADETQKLLRWLLESPEVLAAFCRHLPAKRLASVAGCHHALSRAYLDLLTTWATRLHYDLQKGAWVPTQ
MEDMPWEELCLRLQSLCHAQPFLQEEVLVTLRSRKALDGDFEVPGMSIWTDLLVVLECGIVLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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