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Report for CCDS84086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84086.1 Public Mus musculus 14 Gm3636 23 108 98 CCDS HistoryNCBI Gene:100041151Re-query CCDS DB by CCDS ID:84086.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 84086.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100904.4 ENSMUSP00000098464.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100904.4Link to Ensembl Protein Viewer:ENSMUSP00000098464.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000100904Re-query CCDS DB by Protein ID:ENSMUSP00000098464
Original member Current member NCBI NM_001309401.1 NP_001296330.1 Accepted alive Link to Nucleotide Sequence:NM_001309401.1Link to Protein Sequence:NP_001296330.1Re-query CCDS DB by Nucleotide ID:NM_001309401Re-query CCDS DB by Protein ID:NP_001296330Link to BLAST:NP_001296330.1

Chromosomal Locations for CCDS 84086.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 6736742 6736817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 6739362 6739544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 6740221 6740352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 6741303 6741430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGACTAAGAAGAGATCAAAAATAAATGAACTAGAAGAACTGAAATTGGATATGAGGAAGATCAGCAATG
ACATGGAGGAAATGGGTGGAATCCTGAACCTTTACATGTATGAGGATTTGAACTACAGGATGAACACTGA
ATTCAACATCATTAAATCACAACATGAGAAGACAATGTTGGATATGAATAAAATGATCCAGTCAATAATT
GGTTCCATGCAGTACTCTAAGGAACTGATAGAAGATAACTATTCCTACAGCATTAAGGAGGACCACCTCC
TCCGTGACTGCACTCAACTCCACGAAAACGTAAGGATATTACTGAATGAGAACAGAAGGCTGCTGGTGGA
GCAGGCTGGCCACAAGTGTCCTGTGGGGAAGAAAAGAGGTTCTCTGAGGAGGCCAGCAAGAACATCTGTG
TCCCAAGTGCCAAGGAACAGCAGTCCAGCAGAAAGCAGAACATGGCACAGACCAGGACATGATCTCCCTC
AAAGAGAAGTGCTGGAGGAAGAGCACTGA

Translation (172 aa):
MTKKRSKINELEELKLDMRKISNDMEEMGGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSII
GSMQYSKELIEDNYSYSIKEDHLLRDCTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSV
SQVPRNSSPAESRTWHRPGHDLPQREVLEEEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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