NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39653.1 Public Mus musculus 6 Klrb1 23 108 98 CCDS HistoryNCBI Gene:100043861Re-query CCDS DB by CCDS ID:39653.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112110.3 ENSMUSP00000107738.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112110.3Link to Ensembl Protein Viewer:ENSMUSP00000107738.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112110Re-query CCDS DB by Protein ID:ENSMUSP00000107738
Original member Current member NCBI NM_001099918.2 NP_001093388.1 Accepted alive Link to Nucleotide Sequence:NM_001099918.2Link to Protein Sequence:NP_001093388.1Re-query CCDS DB by Nucleotide ID:NM_001099918Re-query CCDS DB by Protein ID:NP_001093388Link to BLAST:NP_001093388.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093388.1 214 Q0ZUP1 214 100% 0 0

Chromosomal Locations for CCDS 39653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 128706508 128706631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128710047 128710162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128710525 128710679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128712257 128712331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128713583 128713672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128722962 128723046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGGATGCACCAGTGCTCTATGCTGAATTAAATTTAGCCGAGACCAGAGGGCTCAGGTGTACATCAGCTC
CATCTCTCCCCCAAGATGCCTGTCAGGGACCAGGCTGGCATCGGGTGGCTCTGAAACTCGGCTGTGCTGG
GCTGATCTTTCTTCTGATGGTACTCAGTGTCTTAGTGGGATTCTTGGTGCAAAAACCTCTAATAGAAAAA
TGCAGTGTGGCTGTTCAAGAAAACAGGACTGAACCAACAGGGAGATCAGCCACACTAGAGTGCCCGAGAG
ACTGGCATCCACACTGTGATAAATGCTTATTTACTTCTCAAACTTCCAGACCTTGGGCTGACGGTCTGGT
TGACTGTAATTTGAAAGGAGCCACTTTGCTGCTCATTCAAGATGAAGAAGAATTGAGATTATTGCAGAAC
TTCTCAAAGGGAAAAGGACAACAATTTTATATTGGACTAAAATATGAAGAAGTGGACAAGGTTTGGAAGT
GGATGAATGGTTCTATTTTAAATACTAATCTATTACAAATCACTGGCAAGGATGAAGAAAACAGCTGTGC
CCTCATCTCACAAACAGAAGTGTTTTCTGATTCCTGTTCTTCAGACAACCATTGGATCTGCCAAAAGACA
CTGAAACACGTCTGA

Translation (214 aa):
MDAPVLYAELNLAETRGLRCTSAPSLPQDACQGPGWHRVALKLGCAGLIFLLMVLSVLVGFLVQKPLIEK
CSVAVQENRTEPTGRSATLECPRDWHPHCDKCLFTSQTSRPWADGLVDCNLKGATLLLIQDEEELRLLQN
FSKGKGQQFYIGLKYEEVDKVWKWMNGSILNTNLLQITGKDEENSCALISQTEVFSDSCSSDNHWICQKT
LKHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH