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Report for CCDS82290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82290.1 Public Homo sapiens 19 ICAM3 24 110 108 CCDS HistoryNCBI Gene:3385Re-query CCDS DB by CCDS ID:82290.1Re-query CCDS DB by GeneID:3385See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82290.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000589261.5 ENSP00000468333.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000589261.5Link to Ensembl Protein Viewer:ENSP00000468333.1Re-query CCDS DB by Nucleotide ID:ENST00000589261Re-query CCDS DB by Protein ID:ENSP00000468333
Original member Current member NCBI NM_001320606.2 NP_001307535.1 Accepted alive Link to Nucleotide Sequence:NM_001320606.2Link to Protein Sequence:NP_001307535.1Re-query CCDS DB by Nucleotide ID:NM_001320606Re-query CCDS DB by Protein ID:NP_001307535Link to BLAST:NP_001307535.1

Chromosomal Locations for CCDS 82290.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10333857 10334059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10334160 10334408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10334528 10334782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10335066 10335353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10335671 10335976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10338682 10338793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGGGCTGGGCAGCCTTCAATCTCAGCAACGTGACTGGCAACAGTCGGATCCTCTGCTCAGTGTACTGCA
ATGGCTCTCAGATAACAGGCTCCTCTAACATCACCGTGTACAGGCTCCCGGAGCGTGTGGAGCTGGCACC
CCTGCCTCCTTGGCAGCCGGTGGGCCAGAACTTCACCCTGCGCTGCCAAGTGGAGGATGGGTCGCCCCGG
ACCAGCCTCACGGTGGTGCTGCTTCGCTGGGAGGAGGAGCTGAGCCGGCAGCCCGCAGTGGAGGAGCCAG
CGGAGGTCACTGCCACTGTGCTGGCCAGCAGAGACGACCACGGAGCCCCTTTCTCATGCCGCACAGAACT
GGACATGCAGCCCCAGGGGCTGGGACTGTTCGTGAACACCTCAGCCCCCCGCCAGCTCCGAACCTTTGTC
CTGCCCGTGACCCCCCCGCGCCTCGTGGCCCCCCGGTTCTTGGAGGTGGAAACGTCGTGGCCGGTGGACT
GCACCCTAGACGGGCTTTTTCCAGCCTCAGAGGCCCAGGTCTACCTGGCGCTGGGGGACCAGATGCTGAA
TGCGACAGTCATGAACCACGGGGACACGCTAACGGCCACAGCCACAGCCACGGCGCGCGCGGATCAGGAG
GGTGCCCGGGAGATCGTCTGCAACGTGACCCTAGGGGGCGAGAGACGGGAGGCCCGGGAGAACTTGACGG
TCTTTAGCTTCCTAGGACCCATTGTGAACCTCAGCGAGCCCACCGCCCATGAGGGGTCCACAGTGACCGT
GAGTTGCATGGCTGGGGCTCGAGTCCAGGTCACGCTGGACGGAGTTCCGGCCGCGGCCCCGGGGCAGCCA
GCTCAACTTCAGCTAAATGCTACCGAGAGTGACGACGGACGCAGCTTCTTCTGCAGTGCCACTCTCGAGG
TGGACGGCGAGTTCTTGCACAGGAACAGTAGCGTCCAGCTGCGAGTCCTGTATGGTCCCAAAATTGACCG
AGCCACATGCCCCCAGCACTTGAAATGGAAAGATAAAACGAGACACGTCCTGCAGTGCCAAGCCAGGGGC
AACCCGTACCCCGAGCTGCGGTGTTTGAAGGAAGGCTCCAGCCGGGAGGTGCCGGTGGGGATCCCGTTCT
TCGTCAACGTAACACATAATGGTACTTATCAGTGCCAAGCGTCCAGCTCACGAGGCAAATACACCCTGGT
CGTGGTGATGGACATTGAGGCTGGGAGCTCCCACTTTGTCCCCGTCTTCGTGGCGGTGTTACTGACCCTG
GGCGTGGTGACTATCGTACTGGCCTTAATGTACGTCTTCAGGGAGCACCAACGGAGCGGCAGTTACCATG
TTAGGGAGGAGAGCACCTATCTGCCCCTCACGTCTATGCAGCCGACAGAAGCAATGGGGGAAGAACCGTC
CAGAGCTGAGTGA

Translation (470 aa):
MGWAAFNLSNVTGNSRILCSVYCNGSQITGSSNITVYRLPERVELAPLPPWQPVGQNFTLRCQVEDGSPR
TSLTVVLLRWEEELSRQPAVEEPAEVTATVLASRDDHGAPFSCRTELDMQPQGLGLFVNTSAPRQLRTFV
LPVTPPRLVAPRFLEVETSWPVDCTLDGLFPASEAQVYLALGDQMLNATVMNHGDTLTATATATARADQE
GAREIVCNVTLGGERREARENLTVFSFLGPIVNLSEPTAHEGSTVTVSCMAGARVQVTLDGVPAAAPGQP
AQLQLNATESDDGRSFFCSATLEVDGEFLHRNSSVQLRVLYGPKIDRATCPQHLKWKDKTRHVLQCQARG
NPYPELRCLKEGSSREVPVGIPFFVNVTHNGTYQCQASSSRGKYTLVVVMDIEAGSSHFVPVFVAVLLTL
GVVTIVLALMYVFREHQRSGSYHVREESTYLPLTSMQPTEAMGEEPSRAE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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