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Report for CCDS58302.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58302.1 Public Homo sapiens 13 PCID2 24 110 108 CCDS HistoryNCBI Gene:55795Re-query CCDS DB by CCDS ID:58302.1Re-query CCDS DB by GeneID:55795See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58302.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246505.9 ENSP00000246505.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000246505.9Link to Ensembl Protein Viewer:ENSP00000246505.5Re-query CCDS DB by Nucleotide ID:ENST00000246505Re-query CCDS DB by Protein ID:ENSP00000246505
Original member Current member EBI ENST00000622406.4 ENSP00000479494.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622406.4Link to Ensembl Protein Viewer:ENSP00000479494.1Re-query CCDS DB by Nucleotide ID:ENST00000622406Re-query CCDS DB by Protein ID:ENSP00000479494
Original member Current member NCBI NM_001320656.2 NP_001307585.1 Accepted alive Link to Nucleotide Sequence:NM_001320656.2Link to Protein Sequence:NP_001307585.1Re-query CCDS DB by Nucleotide ID:NM_001320656Re-query CCDS DB by Protein ID:NP_001307585Link to BLAST:NP_001307585.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307585.1 453 Q5JVF3-4 453 100% 0 0

Chromosomal Locations for CCDS 58302.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 113178198 113178287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113178966 113179089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113179917 113180042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113180158 113180231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113181130 113181230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113184346 113184487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113185485 113185560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113190872 113190975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113195071 113195125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113196181 113196225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113197019 113197243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113198191 113198264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113200427 113200516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113208599 113208634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGCGCACATTACCATTAACCAGTACCTGCAGCAGGTGTACGAAGCCATCGACAGCAGAGATGGAGCAT
CTTGTGCAGAGTTGGTGTCTTTTAAACATCCTCATGTTGCAAACCCACGACTTCAAATGGCCTCTCCAGA
GGAGAAGTGTCAACAAGTCTTGGAACCCCCTTATGATGAAATGTTTGCAGCTCATTTAAGGTGCACTTAT
GCAGTGGGGAATCATGACTTCATAGAGGCATACAAGTGCCAGACCGTGATAGTCCAATATCCTTTGTCGT
TCATGGCAGCTGTCCCGCATAGAACACATGCAGTGGATTACTTGGGACTTGAGACCCGGAAACACTGGGC
CAGTTGCTCATTTCTGCAGTTAGAAAGGAATGACAGTGTTTTGGAACAGAAGCTCGTTTCAGCTCTTTCA
CTTGGTACATCATTCTTGCGAGCATTCCAGGCCCACAAAGAAGAAAACTGGGCTCTGCCTGTCATGTATG
CAGTAGCGCTTGACCTTCGAGTGTTTGCCAATAATGCAGATCAACAGTTGGTAAAGAAAGGAAAAAGCAA
AGTTGGGGACATGTTGGAAAAAGCAGCAGAGTTACTGATGAGCTGTTTCCGGGTCTGTGCCAGCGACACC
CGTGCTGGTATAGAGGACTCTAAGAAGTGGGGCATGCTGTTTCTGGTGAACCAGCTGTTTAAAATCTACT
TCAAGATCAACAAACTCCATTTATGTAAACCCCTAATTAGAGCAATTGACAGCTCAAACCTGAAAGACGA
TTACAGCACTGCACAGAGAGTAACATACAAATACTACGTTGGACGCAAGGCTATGTTTGACAGCGATTTT
AAGCAAGCTGAGGAGTACCTGTCATTTGCCTTTGAGCATTGTCACCGTTCTAGTCAGAAGAACAAAAGGA
TGATTCTGATCTATTTGCTTCCAGTAAAAATGCTATTGGGTCACATGCCCACTGTGGAGCTCCTGAAAAA
GTATCACCTGATGCAGTTTGCGGAAGTAACCAGAGCTGTGAGCGAGGGCAACCTGCTGCTGCTGCACGAG
GCGCTGGCGAAGCACGAGGCCTTCTTCATTCGCTGCGGAATCTTCCTCATCCTGGAGAAGCTGAAGATCA
TCACCTACAGGAACCTCTTTAAGAAAGTGTATTTGTTACTGAAAACACACCAGCTGTCTCTGGATGCTTT
TCTGGTTGCCTTGAAGTTCATGCAGGTGGAGGACGTGGACATTGACGAAGTTCAGTGTATTCTGGCTAAC
TTGATATACATGGGACACGTCAAAGGCTACATATCGCATCAGCATCAGAAGCTGGTGGTCAGCAAGCAGA
ACCCATTTCCTCCCCTGTCCACGGTGTGTTGA

Translation (453 aa):
MAHITINQYLQQVYEAIDSRDGASCAELVSFKHPHVANPRLQMASPEEKCQQVLEPPYDEMFAAHLRCTY
AVGNHDFIEAYKCQTVIVQYPLSFMAAVPHRTHAVDYLGLETRKHWASCSFLQLERNDSVLEQKLVSALS
LGTSFLRAFQAHKEENWALPVMYAVALDLRVFANNADQQLVKKGKSKVGDMLEKAAELLMSCFRVCASDT
RAGIEDSKKWGMLFLVNQLFKIYFKINKLHLCKPLIRAIDSSNLKDDYSTAQRVTYKYYVGRKAMFDSDF
KQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAEVTRAVSEGNLLLLHE
ALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCILAN
LIYMGHVKGYISHQHQKLVVSKQNPFPPLSTVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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