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Report for CCDS1940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1940.1 Public Homo sapiens 2 WDR54 24 110 108 CCDS HistoryNCBI Gene:84058Re-query CCDS DB by CCDS ID:1940.1Re-query CCDS DB by GeneID:84058See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1940.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000348227.4 ENSP00000006526.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000348227.4Link to Ensembl Protein Viewer:ENSP00000006526.6Re-query CCDS DB by Nucleotide ID:ENST00000348227Re-query CCDS DB by Protein ID:ENSP00000006526
Original member Current member NCBI NM_001320824.2 NP_001307753.1 Accepted alive Link to Nucleotide Sequence:NM_001320824.2Link to Protein Sequence:NP_001307753.1Re-query CCDS DB by Nucleotide ID:NM_001320824Re-query CCDS DB by Protein ID:NP_001307753Link to BLAST:NP_001307753.1
Original member Current member NCBI NM_032118.4 NP_115494.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032118.4Link to Protein Sequence:NP_115494.1Re-query CCDS DB by Nucleotide ID:NM_032118Re-query CCDS DB by Protein ID:NP_115494Link to BLAST:NP_115494.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307753.1 334 Q9H977-1 334 100% 0 0
NP_115494.1 334 Q9H977-1 334 100% 0 0

Chromosomal Locations for CCDS 1940.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74422154 74422375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74422870 74422932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74423319 74423385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74423478 74423531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74423855 74423982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74424875 74424975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74425075 74425237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74425417 74425491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74425570 74425701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGTTCCGCTGGGAGCGCTCCATTCCCCTGCGAGGCTCGGCCGCCGCCCTGTGCAACAACCTCAGTGTGC
TGCAGCTGCCGGCTCGCAACCTCACGTATTTTGGCGTGGTTCATGGACCAAGCGCCCAGCTTCTCAGCGC
TGCTCCTGAGGGTGTGCCCTTGGCCCAGCGCCAGCTCCACGCTAAGGAGGGTGCTGGAGTGAGTCCCCCA
CTTATCACTCAGGTCCACTGGTGTGTCCTCCCCTTCCGAGTGCTGCTGGTACTCACCTCACATCGAGGAA
TACAGATGTACGAGTCCAATGGCTACACCATGGTCTACTGGCATGCACTGGACTCTGGAGATGCCTCCCC
AGTACAGGCTGTGTTTGCCCGGGGAATTGCTGCCAGTGGCCACTTCATCTGTGTGGGAACGTGGTCAGGC
CGGGTGCTGGTGTTTGACATCCCAGCAAAGGGTCCCAACATTGTACTGAGCGAGGAGCTGGCTGGGCACC
AGATGCCAATCACAGACATTGCCACCGAGCCTGCCCAGGGACAGGATTGTGTGGCTGACATGGTGACGGC
AGATGACTCAGGCTTGCTGTGTGTCTGGCGGTCAGGGCCAGAATTCACATTATTGACCCGCATTCCAGGA
TTTGGAGTTCCGTGCCCCTCTGTGCAGCTGTGGCAGGGGATCATAGCAGCAGGCTATGGGAACGGACAAG
TGCATCTATATGAGGCCACTACAGGAAATCTACATGTCCAGATCAATGCCCATGCCCGGGCCATCTGCGC
CCTGGACCTGGCTTCTGAGGTGGGCAAGCTACTCTCTGCAGGTGAGGACACCTTTGTGCATATCTGGAAG
CTGAGCAGAAACCCAGAGAGTGGCTACATTGAGGTGGAACACTGTCATGGTGAGTGTGTCGCCGACACCC
AGCTGTGTGGTGCTCGATTTTGTGATTCCTCAGGCAACTCCTTTGCTGTGACTGGCTATGACCTTGCGGA
GATCCGGAGATTCAGCAGTGTGTGA

Translation (334 aa):
MFRWERSIPLRGSAAALCNNLSVLQLPARNLTYFGVVHGPSAQLLSAAPEGVPLAQRQLHAKEGAGVSPP
LITQVHWCVLPFRVLLVLTSHRGIQMYESNGYTMVYWHALDSGDASPVQAVFARGIAASGHFICVGTWSG
RVLVFDIPAKGPNIVLSEELAGHQMPITDIATEPAQGQDCVADMVTADDSGLLCVWRSGPEFTLLTRIPG
FGVPCPSVQLWQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWK
LSRNPESGYIEVEHCHGECVADTQLCGARFCDSSGNSFAVTGYDLAEIRRFSSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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