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Report for CCDS19812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19812.1 Public Mus musculus 5 Zfand2a 23 108 98 CCDS HistoryNCBI Gene:100494Re-query CCDS DB by CCDS ID:19812.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19812.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079996.12 ENSMUSP00000078910.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079996.12Link to Ensembl Protein Viewer:ENSMUSP00000078910.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079996Re-query CCDS DB by Protein ID:ENSMUSP00000078910
Original member Current member EBI ENSMUST00000110851.7 ENSMUSP00000106475.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110851.7Link to Ensembl Protein Viewer:ENSMUSP00000106475.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110851Re-query CCDS DB by Protein ID:ENSMUSP00000106475
Original member Current member NCBI NM_001159908.1 NP_001153380.1 Accepted alive Link to Nucleotide Sequence:NM_001159908.1Link to Protein Sequence:NP_001153380.1Re-query CCDS DB by Nucleotide ID:NM_001159908Re-query CCDS DB by Protein ID:NP_001153380Link to BLAST:NP_001153380.1
Original member Current member NCBI NM_133349.3 NP_579927.1 Accepted alive Link to Nucleotide Sequence:NM_133349.3Link to Protein Sequence:NP_579927.1Re-query CCDS DB by Nucleotide ID:NM_133349Re-query CCDS DB by Protein ID:NP_579927Link to BLAST:NP_579927.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153380.1 171 Q9JII7 171 100% 0 0
NP_579927.1 171 Q9JII7 171 100% 0 0

Chromosomal Locations for CCDS 19812.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 139473539 139473554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139473730 139473795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139474853 139475004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139478467 139478598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139481966 139482060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139482702 139482756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGGAGTTTCCTGACTTGGGGAAGCACTGTTCAGAACCAACTTGCAAACAGCTAGATTTTCTGCCAATAA
CATGCGACGCCTGTAAACAAGATTTCTGTAAAGACCATTTTTCCTACGTGGGTCATAAGTGTCCCTTTGC
GTTCAAGAAGGATGTGCAGGTGCCTGTGTGTCCTCTCTGCAATGCCCCCATCCCTGTGAAGAGAGGTGAG
ATCCCAGATGTGGTGGTCGGCGAGCACATGGACAGAGATTGCACCTTTCACCCTGGGAGGAACAGAAACA
AGGTTTTCACACATCGCTGCTCCAAAGAGGGATGCAGGAAGAAGGAGATGCTGCAGCTGGCGTGTGCTCA
GTGCCATGGCAACTTCTGCATTCAGCACAGGCATCCTCTGGACCACAATTGCCAGGCTGGGAGCAGCTCA
GCCAGCAGAGGGAGGACTTCTACATCCAGAGCTGCTGAGCAGAAGCCATCGGGAGTCAGTTGGCTGGCCC
AGCGGCTCAGGCGCACAGTGAAGTGA

Translation (171 aa):
MEFPDLGKHCSEPTCKQLDFLPITCDACKQDFCKDHFSYVGHKCPFAFKKDVQVPVCPLCNAPIPVKRGE
IPDVVVGEHMDRDCTFHPGRNRNKVFTHRCSKEGCRKKEMLQLACAQCHGNFCIQHRHPLDHNCQAGSSS
ASRGRTSTSRAAEQKPSGVSWLAQRLRRTVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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