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Report for CCDS57624.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57624.1 Public Mus musculus 8 Gm3336 23 108 98 CCDS HistoryNCBI Gene:100502950Re-query CCDS DB by CCDS ID:57624.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57624.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179347.2 ENSMUSP00000136399.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179347.2Link to Ensembl Protein Viewer:ENSMUSP00000136399.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179347Re-query CCDS DB by Protein ID:ENSMUSP00000136399
Original member Current member NCBI NM_001195253.1 NP_001182182.1 Accepted alive Link to Nucleotide Sequence:NM_001195253.1Link to Protein Sequence:NP_001182182.1Re-query CCDS DB by Nucleotide ID:NM_001195253Re-query CCDS DB by Protein ID:NP_001182182Link to BLAST:NP_001182182.1

Chromosomal Locations for CCDS 57624.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70718554 70718632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70720420 70720728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70721777 70721937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70722044 70722091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGCGAGCTCGTGGCTGCTGCCCCTGGCGCTGGCTCTGCTGCTGCTAGGCGACTCCTCCGTCATCCTTG
CATCCAGGGATGTTAATTTTACACTATTCTTGAAGAGTTTAATAGCAAAGAAAGCCTCTGATACCATCTC
CCCAAGTCCAGAGACAACCCCTGTCCCCACCTCCACAAGTCCAGAGACAACCCCTGATTCTACCTACACA
AGTCTGGAAACCATATCCCCTCCAGATTCCACAACTCCAAATCCGGGCTCAGCCTCCCCAGATCCAGAGA
CAGCCTCTCTCCCCACCTCTGGGTTCCCCAGTTCCGAGCCGACCACCACATCCCAGTCCACGAACTTGCC
TCCACAAGGGTTGTCCACTGTGTCCAGCCCACACCAGGATGCAGGCAGCCTCTGGACCCCCACATCATAC
AGGAACCCCGGTGTGGTGATTGCTGTGTGTCTGCTTGTGTCTGTCTTACTCGTTGGCTCTGCGTTCGTCG
CTGTGAGACATTATAACCGAGATGCTCCAGCTTTCCATAATCTGGATACGGTATCTATGGGCAGCGTGAG
CCAGAGGCTGCCATTTGCTGACCGCCTACAGTCGTGA

Translation (198 aa):
MASSWLLPLALALLLLGDSSVILASRDVNFTLFLKSLIAKKASDTISPSPETTPVPTSTSPETTPDSTYT
SLETISPPDSTTPNPGSASPDPETASLPTSGFPSSEPTTTSQSTNLPPQGLSTVSSPHQDAGSLWTPTSY
RNPGVVIAVCLLVSVLLVGSAFVAVRHYNRDAPAFHNLDTVSMGSVSQRLPFADRLQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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