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Report for CCDS90993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90993.1 Public Homo sapiens 1 SPATA1 24 110 108 CCDS HistoryNCBI Gene:100505741Re-query CCDS DB by CCDS ID:90993.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 90993.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000699524.1 ENSP00000514414.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000699524.1Link to Ensembl Protein Viewer:ENSP00000514414.1Re-query CCDS DB by Nucleotide ID:ENST00000699524Re-query CCDS DB by Protein ID:ENSP00000514414
Original member Current member NCBI NM_001397487.1 NP_001384416.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001397487.1Link to Protein Sequence:NP_001384416.1Re-query CCDS DB by Nucleotide ID:NM_001397487Re-query CCDS DB by Protein ID:NP_001384416Link to BLAST:NP_001384416.1

Chromosomal Locations for CCDS 90993.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 84516360 84516395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84520585 84520691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84522390 84522507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84525696 84525749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84525845 84526073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84532860 84532974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84533709 84533766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84544202 84544304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84545634 84545759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84548786 84548964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84550432 84550530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84555910 84555979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84565861 84565889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGTCACTCAATCCAAGTCGACCTTCCTCATCAGAGTTGGTGGAACTTCATGTTTTTTATGTCCCTGAAG
GATCATGGAACTATAAGCTAAATACCATTTCAACAGAAGTTGTTAACAAATTCATTTCAGCTGGATTTCT
AAGAGTATCTCCTCAACTTACTTTACGAGCCCTGAGGGAGCGTCTTGGTGAGTTCCTGGGTGAAGATGCT
ATTGCAGAAAAATTTTTATTTCTGAAATGCATTGGAAATAATTTAGCTGTGGTGAAGGAAAAGCAAGAAT
CAGAACTGAAACTCAAATCATTTGCTCCTCCATATGCTCTTCAACCAGAATTATATTTGCTTCCTGTAAT
GGACCATTTAGGAAATGTTTATTCACCATCAACAGTTATTTTAGATGAGCGGCAGACTAATAATGGTGTT
AATGAGGCTGATGGAACAATCCACAGACCAATTAGTGTAACTTTGTTCAAGGAGGAACTTGGAAGAGATC
CCAGTTTGTTAGAAAACACTTTGAAAGAGCTTCCTAACAAGAATCAGGAAGAAGCTGGGGGAAAAGCCAC
TGCAGAAAAAAGCCAAATTGCAAAAAATCAAATTGGAAATTCTGAGTTGCCAGGATCATTGGAAGATTCA
AATAATGATTGCTTTGGCACTAAAAAAAGTCAGTGTCTTTGGGAAAATGAAGATGATACAGCTATCAGTA
GAAGACAGGACAATCAGACAGCTGAAAAAGAGTACATCACCCTACCAGATCACCCTTCACTTCCTTGTCA
ACCTGTTCTTTCTTCAGGAATAACTGATATATCTTTATTACAAACTGAAAGAGAGAAGATTATCAAACAA
ATGAAACAAGTAAAGGAAGAAAGAAGGTATCTGGAAAGAAATAGAGAAGAACTAGTAAAAACGGTTGAAA
AGCTATTTGAACAAAGCAAATTAAAACGATATCATGCCTACAATGGTTGGAAGAAAAAATACTTGGAAAC
AAAGAAAGTCACAGCATCAATGGAGGAGGTTTTAACAAAACTTCGAGAAGATTTGGAACTCTACTATAAA
AAACTGCTCATGCAACTTGAAGCCAGGGAGATCAAGATGAGACCAAAGAATCTGGCAAACATCACAGACT
CCAAGAATTACCTAATAATCCAGATCACTGAGGTACAGCATGCAATTGACCAGCTTAAGAGAAAACTAGA
TACTGACAAAATGAAACTCATAGTAGAAGTTAAGTTGCTAGAAGTGTGCCTGGCTAGGAGGTCTACAGAA
GATTTTGTTTATGATGAATCAGCCAAGTCAAAAGGGAGCATTGGCTGCTGCAATACATTCTGA

Translation (440 aa):
MSLNPSRPSSSELVELHVFYVPEGSWNYKLNTISTEVVNKFISAGFLRVSPQLTLRALRERLGEFLGEDA
IAEKFLFLKCIGNNLAVVKEKQESELKLKSFAPPYALQPELYLLPVMDHLGNVYSPSTVILDERQTNNGV
NEADGTIHRPISVTLFKEELGRDPSLLENTLKELPNKNQEEAGGKATAEKSQIAKNQIGNSELPGSLEDS
NNDCFGTKKSQCLWENEDDTAISRRQDNQTAEKEYITLPDHPSLPCQPVLSSGITDISLLQTEREKIIKQ
MKQVKEERRYLERNREELVKTVEKLFEQSKLKRYHAYNGWKKKYLETKKVTASMEEVLTKLREDLELYYK
KLLMQLEAREIKMRPKNLANITDSKNYLIIQITEVQHAIDQLKRKLDTDKMKLIVEVKLLEVCLARRSTE
DFVYDESAKSKGSIGCCNTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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