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Report for CCDS19887.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19887.1 Public Mus musculus 5 N4bp2l1 23 108 98 CCDS HistoryNCBI Gene:100637Re-query CCDS DB by CCDS ID:19887.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19887.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016279.10 ENSMUSP00000016279.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016279.10Link to Ensembl Protein Viewer:ENSMUSP00000016279.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000016279Re-query CCDS DB by Protein ID:ENSMUSP00000016279
Original member Current member NCBI NM_133898.4 NP_598659.3 Accepted alive Link to Nucleotide Sequence:NM_133898.4Link to Protein Sequence:NP_598659.3Re-query CCDS DB by Nucleotide ID:NM_133898Re-query CCDS DB by Protein ID:NP_598659Link to BLAST:NP_598659.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598659.3 238 Q3V2Q8-1 238 100% 0 0

Chromosomal Locations for CCDS 19887.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 150572743 150572992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150574000 150574076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150576250 150576338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150576640 150576767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150594264 150594436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGAGGACAGTTTTCTGGAATCGTTCGGGAGGCTGAGCCTCCAACAGCGGCAGCAGCAGCCGCCTCCTC
GGCCGCCGCCCGCTCGGGGGCCACCTCCGCGCCGCCACAGCTTTAGGAAACACCTCTACCTCCTGCGCGG
CCTCCCGGGCTCGGGAAAAACCACGCTGGCCAGACAGCTGCAGCACGACTACCCCAGAGCCCTGATTTTC
AGCACCGATGACTTTTTCTTCAAGGAAGATGGCACCTATGAGTTCAACCCCAACCTCTTGGAGGAAGCTC
ATGAGTGGAACCAGAGAAGAGCAAGGAAAGCAATGAGGAATGGCATATCCCCCATTATTATTGATAACAC
CAACCTGCACGCCTGGGAAATGAAGCCCTATGCAGTCATGGCTCTTGAGAATAACTATGAAGTTATATTC
CGGGAACCCGACACTCGCTGGAAATTCAACGTTCAAGAGTTAGCAAGAAGAAACATCCATGGGGTCCCAA
AAGAAAAAATACAACGAATGAAAGAACGGTATGAACACAATGTTACCTTTCACAGTGTCCTTCATGCAGA
AAAGCCGAGCAGAGCGAACAGAAACCAGGGCAGGAACAGCGAACCGTCCAGTGGCTCCGGCTACTGGAAC
ACCTACACAGAGCTCCCCAACCGGAGAGCTAATGGCCTCTACTCCAACGAGGGCTACAGAAGGGGTGGCC
ACCACCAAGGATATTAA

Translation (238 aa):
MEDSFLESFGRLSLQQRQQQPPPRPPPARGPPPRRHSFRKHLYLLRGLPGSGKTTLARQLQHDYPRALIF
STDDFFFKEDGTYEFNPNLLEEAHEWNQRRARKAMRNGISPIIIDNTNLHAWEMKPYAVMALENNYEVIF
REPDTRWKFNVQELARRNIHGVPKEKIQRMKERYEHNVTFHSVLHAEKPSRANRNQGRNSEPSSGSGYWN
TYTELPNRRANGLYSNEGYRRGGHHQGY


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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