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Report for CCDS36162.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36162.1 Public Mus musculus 11 Zfp692 23 108 98 CCDS HistoryNCBI Gene:103836Re-query CCDS DB by CCDS ID:36162.1Re-query CCDS DB by GeneID:103836See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36162.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000153510.8 ENSMUSP00000126674.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153510.8Link to Ensembl Protein Viewer:ENSMUSP00000126674.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153510Re-query CCDS DB by Protein ID:ENSMUSP00000126674
Original member Current member EBI ENSMUST00000049353.8 ENSMUSP00000131896.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049353.8Link to Ensembl Protein Viewer:ENSMUSP00000131896.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000049353Re-query CCDS DB by Protein ID:ENSMUSP00000131896
Original member Current member NCBI NM_001040686.1 NP_001035776.1 Accepted alive Link to Nucleotide Sequence:NM_001040686.1Link to Protein Sequence:NP_001035776.1Re-query CCDS DB by Nucleotide ID:NM_001040686Re-query CCDS DB by Protein ID:NP_001035776Link to BLAST:NP_001035776.1
Original member Current member NCBI NM_182996.3 NP_892041.2 Accepted alive Link to Nucleotide Sequence:NM_182996.3Link to Protein Sequence:NP_892041.2Re-query CCDS DB by Nucleotide ID:NM_182996Re-query CCDS DB by Protein ID:NP_892041Link to BLAST:NP_892041.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035776.1 531 Q3U381 531 100% 0 0
NP_892041.2 531 Q3U381 531 100% 0 0

Chromosomal Locations for CCDS 36162.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58307586 58307761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58307973 58308004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58308795 58309058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58309392 58309440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58309528 58309665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58309954 58310172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58310256 58310333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58310418 58310496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58311456 58311570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58313966 58314065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58314177 58314522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGGCCTCTCCGGTGGCAGACGCATCCCGCCGCCGGCGGGAGAAGCGCAGGCAGCTGGACGCGCGCCGCA
GCAAGTGCCGCATCCGCCTGGGCGGCCACATGGAACAGTGGTGCCTCCTCAAGGAGCGGCTGGGCTTCTC
CCTGCACTCGCAGCTCGCCAAGTTCCTGTTGGACCGGTACACTTCTTCAGGCTGTGTCCTCTGTGCAGCT
CCAGAGCCTGGGCCTCGGAAGGGTCTGCAGTACCTGGTGCTCCTGTCTCACACACACAGCCGGGAATGCG
GCCTAGTGCCCGGGCTCCGGGGGCCTGGAGGTGGTGAAGGAGAGCTTGTATGGGAGTGCTCTGCGGGCCA
CACGTTCTCCTGGGAACCCTCTTTGATTCCTGCACCTTCAGATGTACCTAAGCAGGCCCCTCTCACACAC
ACCACAGAGAGAGCCTGGTGTTCAGAGGCCAGGAGGAAGCAGGAAGCCCAAGGTTTGGAATGTGAGCAGC
GAGAAAGGACTCAAGAAACCAGGCTGTCCAGGAGAGTAGATTCTCCATTGGAGATCGACCCACCTCTGGG
AGAGGATCAGGATGTGGAGGAGGAGGAGGAAGAAGAAGAGGAAGAGGAAGAGCTGCTCAGTGACGCCAGC
CCATGGACCTACAGCTCCTCCCCAGATGACAGTGAACCAGACGTCCCTAGGCCACCTCCGTCCCCTGTTA
CGCACACACCTAAGGAGGGAGAGGTCTCGCCAGTACCTGCAACTCTGCCCACTCCCTGTGCTGTTCTCGC
CTCCGTGGGTTCTCCAGATGCTCTGACATCAGATACTGAGGTGCGGCTGGAACTCAGCAGGACCCCTCAG
GTGCCTGCAGAGCTGCACATGACTGAGTCTCTGGAGAGCCCTGGGAGTCAGGCCCAGTCTGCTCCGAATC
CGACTTGGGATGAGGATACTGCCCAGATTGGGCTCAGGAGAATTAGGAAAGCTGCCAAAAGAGAGCTGAT
GCCCTGCGACTTCCCTGGCTGTGGAAGGATCTTCTCCAACCGGCAGTATCTGAATCACCACAAGAAGTAC
CAGCATATCCACCAGAAGTCGTTCTGCTGCCCTGAGCCAGCTTGTGGGAAGTCCTTCAACTTTAAAAAGC
ACCTGAAGGAGCATGTGAAACTCCACAGCGATACCAGGGACTACATCTGTGAATTCTGTGCTCGATCTTT
CCGCACTAGCAGCAACCTTGTCATCCACAGACGAATCCACACAGGAGAGAAACCCCTGCAGTGTGAGATA
TGTGGATTTACTTGCCGGCAGAAGGCCTCCCTAAACTGGCACCGACGCAAGCATGCAGAGACAGCAGCTG
CCCTGCGATTCCCCTGTGAATTCTGTGGCAAACGCTTTGAGAAGCCAGACAGTGTGGTAGCTCACTGTAG
CAAAAGCCACCCAGCCCTGCTCCCAGCACAAGAGCCACCTGGCTCTTTGGTGTCTAGTCCCAGCATTTCT
GCCCCTGAATCCCTGCAGTCTCCTGAGGGGGCTAGCATCTCTACCACTTCTGACTCTAATCCTGCCTCCT
CAACATCCATTTCTTCACCTGGGGTGCCAGACCCCAGGAACAGAGAGAAAAGTTAG

Translation (531 aa):
MASPVADASRRRREKRRQLDARRSKCRIRLGGHMEQWCLLKERLGFSLHSQLAKFLLDRYTSSGCVLCAA
PEPGPRKGLQYLVLLSHTHSRECGLVPGLRGPGGGEGELVWECSAGHTFSWEPSLIPAPSDVPKQAPLTH
TTERAWCSEARRKQEAQGLECEQRERTQETRLSRRVDSPLEIDPPLGEDQDVEEEEEEEEEEEELLSDAS
PWTYSSSPDDSEPDVPRPPPSPVTHTPKEGEVSPVPATLPTPCAVLASVGSPDALTSDTEVRLELSRTPQ
VPAELHMTESLESPGSQAQSAPNPTWDEDTAQIGLRRIRKAAKRELMPCDFPGCGRIFSNRQYLNHHKKY
QHIHQKSFCCPEPACGKSFNFKKHLKEHVKLHSDTRDYICEFCARSFRTSSNLVIHRRIHTGEKPLQCEI
CGFTCRQKASLNWHRRKHAETAAALRFPCEFCGKRFEKPDSVVAHCSKSHPALLPAQEPPGSLVSSPSIS
APESLQSPEGASISTTSDSNPASSTSISSPGVPDPRNREKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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