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Report for CCDS38272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38272.1 Public Mus musculus 2 Rspo4 23 108 98 CCDS HistoryNCBI Gene:228770Re-query CCDS DB by CCDS ID:38272.1Re-query CCDS DB by GeneID:228770See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38272.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042217.3 ENSMUSP00000041578.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042217.3Link to Ensembl Protein Viewer:ENSMUSP00000041578.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000042217Re-query CCDS DB by Protein ID:ENSMUSP00000041578
Original member Current member NCBI NM_001040689.1 NP_001035779.1 Accepted alive Link to Nucleotide Sequence:NM_001040689.1Link to Protein Sequence:NP_001035779.1Re-query CCDS DB by Nucleotide ID:NM_001040689Re-query CCDS DB by Protein ID:NP_001035779Link to BLAST:NP_001035779.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035779.1 228 Q8BJ73-1 228 100% 0 0

Chromosomal Locations for CCDS 38272.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 151843074 151843152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151867756 151867944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151868571 151868711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151869769 151869954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151873040 151873131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGCGGGCTCCACTCTGCCTGCTGCTGCTCCTCGCCCACGCAGTGGACATGCTCGCCCTGTACCGAAGGA
AGAAGCAAGCAGGCACTGGTCTGGGGGGCAACTGCACGGGCTGTGTCATATGCTCGGAGGAGAATGGCTG
TTCCACCTGCCAGCAGAGGCTCTTCCTCTTCATCCGCCGTGAAGGCATCCGTCAGTACGGCAAGTGTGTG
CACGACTGTCCCCTTGGCTTCTTTGGGATCCGTGGCCAGGAGGCCAACAGGTGCAAGAAATGTGGGGCCA
CGTGCGAGAGCTGTTTCAGCCAGGACTTCTGTATCCGCTGCAAAAGGCGGTTTCACCTATACAAAGGGAA
GTGCCTGCCCTCCTGTCCACCGGGCACCTTGACCCACCAGAGTACCCGGGAGTGCCAGGAAGAGTGTGAG
CCGAGCCCTTGGGGCAGCTGGAGTCCCTGCATACACAATGGGAAGACCTGTGGCTCAGGCTGGGGCCTAG
AAACCCGGGTCCGGGAGGCTGGCCCGGCCAAGCAGGAAGAGACGGCGAGTTGCCGAGTGTTATCTGAGTC
CAGGAAGTGTCCTATAAAGAGACTCTGCCCAGGAGAAAGAAATCCCAGGCAGAAGAACAGGAAGGATCGG
CGCCAGCGTAAGGACAGGAAGTTGGAGCGCAGGCCACACCAGCGTGGCTCACAGTGA

Translation (228 aa):
MRAPLCLLLLLAHAVDMLALYRRKKQAGTGLGGNCTGCVICSEENGCSTCQQRLFLFIRREGIRQYGKCV
HDCPLGFFGIRGQEANRCKKCGATCESCFSQDFCIRCKRRFHLYKGKCLPSCPPGTLTHQSTRECQEECE
PSPWGSWSPCIHNGKTCGSGWGLETRVREAGPAKQEETASCRVLSESRKCPIKRLCPGERNPRQKNRKDR
RQRKDRKLERRPHQRGSQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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