NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38328.1 Public Mus musculus 2 Snx21 23 108 98 CCDS HistoryNCBI Gene:101113Re-query CCDS DB by CCDS ID:38328.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38328.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056181.6 ENSMUSP00000054137.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056181.6Link to Ensembl Protein Viewer:ENSMUSP00000054137.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000056181Re-query CCDS DB by Protein ID:ENSMUSP00000054137
Original member NCBI NM_133924.3 NP_598685.2 Updated not alive Link to Nucleotide Sequence:NM_133924.3Link to Protein Sequence:NP_598685.2Re-query CCDS DB by Nucleotide ID:NM_133924Re-query CCDS DB by Protein ID:NP_598685
Current member NCBI NM_133924.4 NP_598685.2 Accepted alive Link to Nucleotide Sequence:NM_133924.4Link to Protein Sequence:NP_598685.2Re-query CCDS DB by Nucleotide ID:NM_133924Re-query CCDS DB by Protein ID:NP_598685Link to BLAST:NP_598685.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598685.2 363 Q3UR97 363 100% 0 0

Chromosomal Locations for CCDS 38328.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164786066 164786324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164786698 164786855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164791713 164792387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGGCCTCGCGGCTCCTACACCGGCTGCGACACGCCCTGGCCAGCGATGGCCCCGGGGAGGCGGCGGCGG
GCCCAGAGGCCGAGCAGTTCCCTGAGAGCTCAGAGCTGGAGGACGATGACGCCGAGGGCCTGTCCTCCCG
CCTCAGTGGCACCCTCAGCTTCACTAGTGCGGAGGATGACCCTGACGACGAAGACGAGGACGACGAGGCG
GGCCTCGACTCGCCGCCCTCAGGAGACGGGGCATCGGGAGAAGACGCAGAACGAAGTCCCCCACCTGATG
GACAACGGAGCAGTCAACTCCTGGCCCGCCAGCTGCAGGATTTCTGGAAAAAGTCTCGGAACACCCTAGT
TCCACAGAGGCTGCTCTTTGAGGTGACCAGCGCCAATGTTGTCAAAGACCCTCCCTCCAAGTACGTGCTC
TACACCCTCGCCGTGATGGGCCCAGGGCCACCAGATCGCCAGCCAGCCCAGATCTCTCGCCGATACTCGG
ACTTTGAGCGGCTGCACAGAAACCTGCAGCGGCAATTCCGGGGCCCCATGTCTGCCATCTCCTTTCCCCG
TAAGCGCCTGCGCCGGAACTTTACTGCAGAAACCATTGCCCGTCGCAGCAGGGCCTTTGAACAGTTTTTG
GGCCACCTGCAGGCAGTGCCAGAGCTACGCCAAGCTCCGGACCTGCAGGACTTCTTTGTGCTGCCCGAGT
TGCGGCGGGCACAGAGCCTCACCTGCACTGGTCTTTATCGTGAGGCTCTGGCATTGTGGGCCAACGCCTG
GCAGCTGCAGACCCAGTTGGGCACCCCATCTGGCCCAGACCGTCCCCTGTTGACTCTGGCTGGGCTGGCC
GTGTGCCATCAGGAGCTGGAGGATCCCGGGGAAGCCCGAGCCTGCAGTGAGAAGGCCCTGCAGCTGCTGG
GGGACAAGAGACCCCATCCTTTCCTGGCACCCTTTCTTGAGGCCCATGTCCGGCTCTCCTGGCGCCTGGG
CCTGGACAAACGGCAGTCGGAGGCCCAGCTCCAGGCACTACAGGAAGCAGGCCTTACCTCTACCCCACCG
CCCAGCCTCAAGGAGCTGCTCATCAAAGAGGTGCTGGACTAA

Translation (363 aa):
MASRLLHRLRHALASDGPGEAAAGPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDPDDEDEDDEA
GLDSPPSGDGASGEDAERSPPPDGQRSSQLLARQLQDFWKKSRNTLVPQRLLFEVTSANVVKDPPSKYVL
YTLAVMGPGPPDRQPAQISRRYSDFERLHRNLQRQFRGPMSAISFPRKRLRRNFTAETIARRSRAFEQFL
GHLQAVPELRQAPDLQDFFVLPELRRAQSLTCTGLYREALALWANAWQLQTQLGTPSGPDRPLLTLAGLA
VCHQELEDPGEARACSEKALQLLGDKRPHPFLAPFLEAHVRLSWRLGLDKRQSEAQLQALQEAGLTSTPP
PSLKELLIKEVLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH