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Report for CCDS546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
546.1 Public Homo sapiens 1 PDZK1IP1 24 110 108 CCDS HistoryNCBI Gene:10158Re-query CCDS DB by CCDS ID:546.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 546.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294338.7 ENSP00000294338.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000294338.7Link to Ensembl Protein Viewer:ENSP00000294338.2Re-query CCDS DB by Nucleotide ID:ENST00000294338Re-query CCDS DB by Protein ID:ENSP00000294338
Original member Current member EBI ENST00000371885.1 ENSP00000360952.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371885.1Link to Ensembl Protein Viewer:ENSP00000360952.1Re-query CCDS DB by Nucleotide ID:ENST00000371885Re-query CCDS DB by Protein ID:ENSP00000360952
Original member Current member NCBI NM_005764.4 NP_005755.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005764.4Link to Protein Sequence:NP_005755.1Re-query CCDS DB by Nucleotide ID:NM_005764Re-query CCDS DB by Protein ID:NP_005755Link to BLAST:NP_005755.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005755.1 114 Q13113 114 100% 0 0

Chromosomal Locations for CCDS 546.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 47183971 47184043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47185002 47185097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47187319 47187427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47189866 47189932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (345 nt):
ATGTCGGCCCTCAGCCTCCTCATTCTGGGCCTGCTCACGGCAGTGCCACCTGCCAGCTGTCAGCAAGGCC
TGGGGAACCTTCAGCCCTGGATGCAGGGCCTTATCGCGGTGGCCGTGTTCCTGGTCCTCGTTGCAATCGC
CTTTGCAGTCAACCACTTCTGGTGCCAGGAGGAGCCGGAGCCTGCACACATGATCCTGACCGTCGGAAAC
AAGGCAGATGGAGTCCTGGTGGGAACAGATGGAAGGTACTCTTCGATGGCGGCCAGTTTCAGGTCCAGTG
AGCATGAGAATGCCTATGAGAATGTGCCCGAGGAGGAAGGCAAGGTCCGCAGCACCCCGATGTAA

Translation (114 aa):
MSALSLLILGLLTAVPPASCQQGLGNLQPWMQGLIAVAVFLVLVAIAFAVNHFWCQEEPEPAHMILTVGN
KADGVLVGTDGRYSSMAASFRSSEHENAYENVPEEEGKVRSTPM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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