NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34169.1 Public Homo sapiens 5 RNF180 24 110 108 CCDS HistoryNCBI Gene:285671Re-query CCDS DB by CCDS ID:34169.1Re-query CCDS DB by GeneID:285671See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34169.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296615.10 ENSP00000296615.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000296615.10Link to Ensembl Protein Viewer:ENSP00000296615.6Re-query CCDS DB by Nucleotide ID:ENST00000296615Re-query CCDS DB by Protein ID:ENSP00000296615
Original member Current member NCBI NM_178532.4 NP_848627.1 Accepted alive Link to Nucleotide Sequence:NM_178532.4Link to Protein Sequence:NP_848627.1Re-query CCDS DB by Nucleotide ID:NM_178532Re-query CCDS DB by Protein ID:NP_848627Link to BLAST:NP_848627.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848627.1 416 Q86T96-2 416 100% 0 0

Chromosomal Locations for CCDS 34169.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 64200808 64200942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64212065 64212160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64213558 64214517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64217361 64217420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGAAAAGAAGCAAAGAATTGATAACTAAAAATCATAGTCAAGAGGAAACAAGTATTCTTCGTTGTTGGA
AATGTAGAAAATGTATAGCAAGCTCTGGTTGTTTTATGGAGTATCTTGAGAATCAAGTGATTAAGGATAA
AGATGATTCAGTTGATGCTCAAAATATTTGTCATGTGTGGCACATGAATGTAGAAGCCCTTCCAGAATGG
ATAAGCTGCCTAATCCAAAAAGCCCAGTGGACAGTTGGAAAACTGAATTGTCCTTTCTGTGGGGCCCGTT
TAGGGGGCTTTAATTTTGTCAGCACTCCAAAATGTTCCTGTGGCCAGCTTGCAGCTGTACATCTCTCCAA
GAGCCGGACTGATTATCAGCCAACACAGGCAGGCAGACTAATGAGACCATCAGTGAAATACTTGTCACAT
CCTAGAGTTCAGTCAGGTTGTGACAAGGAAGCTCTGCTGACAGGTGGTGGCTCTGAAAACAGAAATCACA
GGCTTTTAAACATGGCCCGAAATAATAATGACCCTGGAAGATTAACAGAAGCACTCTGCCTGGAGGTGCG
ACCAACATATTTTGAGATGAAGAACGAAAAACTGCTGTCCAAAGCATCAGAACCAAAATACCAGCTTTTT
GTTCCCCAGCTTGTGACTGGCAGATGCGCTACAAGAGCTTTTCATAGAAAATCACATAGTTTGGATCTGA
ACATCAGTGAGAAACTGACTTTATTACCCACTTTATATGAAATACATAGTAAGACTACTGCCTATTCCAG
ACTAAATGAAACACAGCCTATTGACCTTTCAGGCTTGCCTTTACAATCTAGTAAAAATAGCTATTCCTTT
CAGAATCCATCCAGTTTTGATCCTAGTATGCTGCTGCAAAGATTTTCAGTGGCCCCCCATGAGACCCAGA
CACAAAGAGGAGGAGAATTTCAGTGTGGTCTAGAAGCTGCTTCAGTGTATTCTGACCATACTAATACTAA
CAATCTGACTTTCCTGATGGACCTGCCCTCAGCTGGCAGGAGCATGCCGGAGGCCTCAGACCAGGAAGAG
CACCTCTCCCCTCTGGACTTCCTGCACTCAGCCAATTTTTCATTGGGCAGCATTAATCAGAGGCTTAATA
AGAGAGAAAGGAGCAAGTTGAAGAATCTAAGAAGGAAACAACGAAGGCGTGAAAGATGGCTACAGAAGCA
GGGTAAATACTCAGGAGTGGGATTGCTGGATCATATGGTAAGTATATATTTACTTATATGA

Translation (416 aa):
MKRSKELITKNHSQEETSILRCWKCRKCIASSGCFMEYLENQVIKDKDDSVDAQNICHVWHMNVEALPEW
ISCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRTDYQPTQAGRLMRPSVKYLSH
PRVQSGCDKEALLTGGGSENRNHRLLNMARNNNDPGRLTEALCLEVRPTYFEMKNEKLLSKASEPKYQLF
VPQLVTGRCATRAFHRKSHSLDLNISEKLTLLPTLYEIHSKTTAYSRLNETQPIDLSGLPLQSSKNSYSF
QNPSSFDPSMLLQRFSVAPHETQTQRGGEFQCGLEAASVYSDHTNTNNLTFLMDLPSAGRSMPEASDQEE
HLSPLDFLHSANFSLGSINQRLNKRERSKLKNLRRKQRRRERWLQKQGKYSGVGLLDHMVSIYLLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH