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Report for CCDS14279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14279.1 Public Homo sapiens X ZNF41 24 110 108 CCDS HistoryNCBI Gene:7592Re-query CCDS DB by CCDS ID:14279.1Re-query CCDS DB by GeneID:7592See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14279.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000313116.11 ENSP00000315173.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000313116.11Link to Ensembl Protein Viewer:ENSP00000315173.7Re-query CCDS DB by Nucleotide ID:ENST00000313116Re-query CCDS DB by Protein ID:ENSP00000315173
Original member Current member EBI ENST00000377065.8 ENSP00000366265.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377065.8Link to Ensembl Protein Viewer:ENSP00000366265.4Re-query CCDS DB by Nucleotide ID:ENST00000377065Re-query CCDS DB by Protein ID:ENSP00000366265
Original member Current member EBI ENST00000684689.1 ENSP00000508254.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000684689.1Link to Ensembl Protein Viewer:ENSP00000508254.1Re-query CCDS DB by Nucleotide ID:ENST00000684689Re-query CCDS DB by Protein ID:ENSP00000508254
Original member Current member NCBI NM_001324140.2 NP_001311069.1 Accepted alive Link to Nucleotide Sequence:NM_001324140.2Link to Protein Sequence:NP_001311069.1Re-query CCDS DB by Nucleotide ID:NM_001324140Re-query CCDS DB by Protein ID:NP_001311069Link to BLAST:NP_001311069.1
Original member Current member NCBI NM_001324144.2 NP_001311073.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001324144.2Link to Protein Sequence:NP_001311073.1Re-query CCDS DB by Nucleotide ID:NM_001324144Re-query CCDS DB by Protein ID:NP_001311073Link to BLAST:NP_001311073.1
Original member Current member NCBI NM_001324147.2 NP_001311076.1 Accepted alive Link to Nucleotide Sequence:NM_001324147.2Link to Protein Sequence:NP_001311076.1Re-query CCDS DB by Nucleotide ID:NM_001324147Re-query CCDS DB by Protein ID:NP_001311076Link to BLAST:NP_001311076.1
Original member Current member NCBI NM_001324150.2 NP_001311079.1 Accepted alive Link to Nucleotide Sequence:NM_001324150.2Link to Protein Sequence:NP_001311079.1Re-query CCDS DB by Nucleotide ID:NM_001324150Re-query CCDS DB by Protein ID:NP_001311079Link to BLAST:NP_001311079.1
Original member Current member NCBI NM_007130.4 NP_009061.1 Accepted alive Link to Nucleotide Sequence:NM_007130.4Link to Protein Sequence:NP_009061.1Re-query CCDS DB by Nucleotide ID:NM_007130Re-query CCDS DB by Protein ID:NP_009061Link to BLAST:NP_009061.1
Original member Current member NCBI NM_153380.3 NP_700359.1 Accepted alive Link to Nucleotide Sequence:NM_153380.3Link to Protein Sequence:NP_700359.1Re-query CCDS DB by Nucleotide ID:NM_153380Re-query CCDS DB by Protein ID:NP_700359Link to BLAST:NP_700359.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311069.1 779 P51814-6 779 100% 0 0
NP_001311073.1 779 P51814-6 779 100% 0 0
NP_001311076.1 779 P51814-6 779 100% 0 0
NP_001311079.1 779 P51814-6 779 100% 0 0
NP_009061.1 779 P51814-6 779 100% 0 0
NP_700359.1 779 P51814-6 779 100% 0 0

Chromosomal Locations for CCDS 14279.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 47447430 47449474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47455921 47456016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47456272 47456398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47467410 47467481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2340 nt):
ATGGCAGCTAATGGGGACTCTCCCCCATGGTCCCCGGCCCTGGCTGCAGAGGGACGTGGCAGCTCATGTG
AGGCTTCAGTGTCATTTGAGGACGTGACTGTGGACTTCAGCAAGGAGGAGTGGCAGCACTTGGACCCTGC
CCAGAGACGCCTGTACTGGGATGTGACACTAGAGAACTACAGCCACCTGCTCTCAGTGGGGTACCAAATT
CCCAAGTCAGAGGCTGCCTTCAAGTTGGAGCAAGGAGAGGGGCCATGGATGCTGGAGGGGGAAGCCCCAC
ATCAGAGCTGTTCAGGTGAGGCTATTGGGAAAATGCAGCAACAGGGAATTCCTGGAGGAATTTTCTTCCA
CTGTGAGAGATTTGATCAACCCATAGGAGAAGATTCATTATGTTCTATTTTAGAAGAACTGTGGCAAGAT
AATGACCAGCTAGAGCAACGTCAGGAAAACCAGAATAACCTTTTAAGTCATGTGAAAGTATTGATTAAGG
AGAGGGGCTATGAACATAAAAACATTGAAAAAATAATTCATGTGACTACCAAGCTTGTTCCTTCAATTAA
AAGACTCCATAACTGTGACACAATTTTGAAGCATACTTTAAACTCACATAATCATAATAGAAACAGTGCA
ACAAAGAACCTTGGCAAGATTTTTGGAAATGGTAACAATTTCCCCCATAGCCCTTCCTCTACTAAGAATG
AGAATGCTAAAACAGGAGCAAATTCCTGTGAACATGACCACTATGAAAAACATCTCAGCCACAAACAAGC
TCCCACCCACCATCAGAAAATTCATCCTGAGGAGAAGCTTTATGTGTGTACTGAATGTGTAATGGGCTTC
ACTCAGAAGTCACATCTGTTTGAGCATCAGAGAATTCATGCTGGAGAAAAGTCCCGTGAATGTGACAAAA
GCAACAAAGTCTTCCCCCAGAAACCCCAGGTTGATGTACATCCAAGTGTTTATACAGGAGAAAAACCCTA
TCTGTGTACTCAATGTGGGAAAGTCTTTACCCTCAAATCAAACCTCATTACACATCAAAAAATTCATACC
GGGCAGAAACCCTACAAATGCAGTGAATGTGGAAAAGCCTTTTTCCAGAGATCAGACCTCTTTAGACATC
TGAGAATTCATACAGGAGAAAAACCTTATGAATGCAGTGAATGTGGAAAAGGCTTCTCCCAGAACTCAGA
CCTCAGTATACATCAGAAAACTCATACCGGAGAGAAACACTATGAATGCAATGAATGTGGGAAGGCTTTC
ACAAGAAAATCAGCACTCAGGATGCATCAGAGAATCCACACGGGAGAGAAACCTTATGTATGCGCTGACT
GTGGGAAGGCCTTCATCCAGAAATCACATTTCAACACACATCAGAGAATTCATACTGGAGAAAAGCCGTA
TGAATGCAGTGACTGTGGGAAATCCTTCACTAAGAAGTCACAACTCCATGTGCATCAAAGAATTCACACC
GGAGAGAAACCCTATATATGTACAGAATGTGGAAAGGTCTTCACTCACAGGACAAACCTCACCACACATC
AGAAAACTCATACTGGGGAAAAACCCTATATGTGTGCTGAATGTGGAAAGGCTTTTACTGACCAGTCAAA
TCTCATTAAACACCAGAAAACTCACACTGGAGAGAAACCCTATAAGTGCAATGGCTGTGGAAAAGCCTTC
ATATGGAAGTCGCGCCTCAAAATACATCAGAAATCTCATATTGGAGAGAGACACTATGAATGCAAGGACT
GCGGGAAAGCCTTCATCCAGAAATCAACACTAAGCGTGCATCAGAGAATCCATACAGGAGAGAAACCGTA
CGTTTGTCCTGAATGCGGGAAGGCCTTTATCCAGAAATCGCACTTCATTGCGCATCATAGAATCCATACT
GGAGAGAAGCCTTATGAATGCAGCGACTGTGGGAAATGCTTCACTAAGAAGTCACAACTCCGTGTGCATC
AGAAAATCCACACAGGTGAGAAGCCCAATATATGTGCTGAATGTGGAAAGGCCTTCACTGACCGATCAAA
TCTCATAACACATCAGAAAATCCACACTAGGGAGAAACCCTATGAATGTGGTGACTGCGGGAAAACCTTC
ACCTGGAAGTCACGCCTCAATATACATCAGAAGTCTCATACTGGAGAAAGACACTATGAATGTAGTAAAT
GTGGGAAAGCTTTCATCCAGAAAGCCACACTAAGTATGCATCAGATAATTCATACAGGAAAGAAACCTTA
TGCTTGTACAGAATGTCAGAAGGCCTTTACTGACAGATCGAATCTCATTAAACACCAGAAAATGCATAGT
GGAGAAAAACGCTATAAAGCCAGTGACTGA

Translation (779 aa):
MAANGDSPPWSPALAAEGRGSSCEASVSFEDVTVDFSKEEWQHLDPAQRRLYWDVTLENYSHLLSVGYQI
PKSEAAFKLEQGEGPWMLEGEAPHQSCSGEAIGKMQQQGIPGGIFFHCERFDQPIGEDSLCSILEELWQD
NDQLEQRQENQNNLLSHVKVLIKERGYEHKNIEKIIHVTTKLVPSIKRLHNCDTILKHTLNSHNHNRNSA
TKNLGKIFGNGNNFPHSPSSTKNENAKTGANSCEHDHYEKHLSHKQAPTHHQKIHPEEKLYVCTECVMGF
TQKSHLFEHQRIHAGEKSRECDKSNKVFPQKPQVDVHPSVYTGEKPYLCTQCGKVFTLKSNLITHQKIHT
GQKPYKCSECGKAFFQRSDLFRHLRIHTGEKPYECSECGKGFSQNSDLSIHQKTHTGEKHYECNECGKAF
TRKSALRMHQRIHTGEKPYVCADCGKAFIQKSHFNTHQRIHTGEKPYECSDCGKSFTKKSQLHVHQRIHT
GEKPYICTECGKVFTHRTNLTTHQKTHTGEKPYMCAECGKAFTDQSNLIKHQKTHTGEKPYKCNGCGKAF
IWKSRLKIHQKSHIGERHYECKDCGKAFIQKSTLSVHQRIHTGEKPYVCPECGKAFIQKSHFIAHHRIHT
GEKPYECSDCGKCFTKKSQLRVHQKIHTGEKPNICAECGKAFTDRSNLITHQKIHTREKPYECGDCGKTF
TWKSRLNIHQKSHTGERHYECSKCGKAFIQKATLSMHQIIHTGKKPYACTECQKAFTDRSNLIKHQKMHS
GEKRYKASD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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